Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq23831 102 6e-16 seq24867 89.7 4e-12 >seq23831 Length=243 Score = 102 bits (112), Expect = 6e-16 Identities = 117/157 (75%), Gaps = 3/157 (2%) Strand=Plus/Minus Query 518153 TCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATA 518212 ||||| |||| ||| || | ||||| || ||||| || || || || ||||| || Sbjct 159 TCTTTTCCTTG---TTTGTCTAATCCATAAGCTAAAGCTGCTGCTGTAGGCTCATTGATG 103 Query 518213 ATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAA 518272 || | || || || | ||| |||||| ||||| ||||| || ||||| | ||||| Sbjct 102 ATACGCATTACTTTTAAACCTGCAATTTCACCTGCTTCTTTTGTAGCTTGACGTTGTGCG 43 Query 518273 TCGTTAAAATATGCAGGAACAGTAATAACGGCATCAG 518309 |||||||| ||||| |||||||||||||| || |||| Sbjct 42 TCGTTAAAGTATGCTGGAACAGTAATAACTGCTTCAG 6 Score = 86.0 bits (94), Expect = 5e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 322239 CTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAAC 322298 |||| || || || | ||||||||| || || ||||| || || | || | ||||| Sbjct 143 CTAATCCATAAGCTAAAGCTGCTGCTGTAGGCTCATTGATGATACGCATTACTTTTAAAC 84 Query 322299 CCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTA 322358 | ||||||| | | | || || ||||| | |||||||| ||||| |||||||| | Sbjct 83 CTGCAATTTCACCTGCTTCTTTTGTAGCTTGACGTTGTGCGTCGTTAAAGTATGCTGGAA 24 Query 322359 CAGTAATAACTGCTT 322373 ||||||||||||||| Sbjct 23 CAGTAATAACTGCTT 9 >seq24867 Length=238 Score = 89.7 bits (98), Expect = 4e-12 Identities = 113/152 (74%), Gaps = 4/152 (3%) Strand=Plus/Plus Query 366997 GTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCAT 367056 || || || || || || || ||||| ||| |||| || ||||| ||| |||| |||||| Sbjct 9 GTGGCTACCATTGCTTTCGGAATGGGAATTGATAAGCCAGATGTAAGATTTGTCATTCAT 68 Query 367057 TATGGAGCTCCCAAGAATA--TTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTG 367114 |||| | | |||| ||| | ||| ||||||||||||||| |||||||| ||| | | Sbjct 69 TATG-ATATTCCAA-AATCGCTAGAAAGTTATTATCAAGAAACAGGTAGAGCTGGTAGAG 126 Query 367115 ATGGAGAAAAATCTTATTGTTATGCATTTTAT 367146 |||||| | || | |||| || |||||| Sbjct 127 ATGGAGGAGAAGGTCATTGCATAGCTTTTTAT 158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779012985830878