Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq106 181 1e-40 >seq106 Length=32284 Score = 181 bits (200), Expect = 1e-40 Identities = 533/821 (65%), Gaps = 3/821 (0%) Strand=Plus/Plus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 ||||| || || || ||||| || || || | ||| || ||||||||||| ||| Sbjct 8170 TCATCCTCCTCCTTGTACTTCTCGGCTTCCGACAACATGCGCTCGATGTCTTCTTTGGAT 8229 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 | | ||||| || || || || |||||| | ||||||||| | | |||| || || Sbjct 8230 AGGCGACCCTTGTCGTTGGTGATGACAATCTTGTTGGATTTACCGGTGCCCTTTTCAACA 8289 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 ||| ||||||| |||||||| ||||| | ||| || | || | ||| || || | Sbjct 8290 GCAGACACATTCATGATACCATTGGCATCGAGATCAAAGGTAACTTCAATCTGAGGAACA 8349 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808 || | || |||| ||||| || || | ||||| | || | | |||| ||| | Sbjct 8350 CCACGGGGAGCGGGGGGAATGCCAGTAAGCTCAAACTTGCCCATGAGGTTGTTGTCCTTG 8409 Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCC 6868 | || || || || ||| |||| | ||| |||| |||| || || || Sbjct 8410 GTGCGCTGTCGCTCGCCCTCAAAGACCTGAATGAGCACCCCAGGCTGGTTGTCAGAGAAG 8469 Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928 || ||||| | | ||||| | |||||| || || || | ||||| | | ||| Sbjct 8470 GTCGAGAAAACCTCAGACTTCTTGGTTGGAATGGTTGTGTTACGAGGAATGAGCTTCGTC 8529 Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGG 6988 || || ||||| || || | || ||||||| ||| | ||||| | | || | Sbjct 8530 ATCATTCCACCGGCGGTCTCAATACCCAGAGACAAAGGCGCGACGTCAAGCAACAAGATT 8589 Query 6989 TCTTGAACAGATTCG---TTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCG 7045 || | ||| | | || || | | ||| || || ||||| | || ||| Sbjct 8590 TCGTTGGTAGACTTGGAAGAAGTGTCTCCAGACAGGATAGCAGCCTGGACAGCGGCACCG 8649 Query 7046 TATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC 7105 || || || |||||||| ||||| || | || || | ||||| |||||||| || || Sbjct 8650 TACGCAACAGCCTCATCAGGGTTGATAGACTTGTTGGGCTCTTTGCCGTTAAAGTAGTCG 8709 Query 7106 GATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTC 7165 || | | || || ||| || || || || || ||||| ||||| || || |||| Sbjct 8710 GAGATGAGTTTCTGGATTCGGGGAATACGGGTGGAACCACCAACCAAGACAATCTCATGA 8769 Query 7166 ACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTA 7225 |||| ||||| || ||||| | ||| || |||||||| | || Sbjct 8770 ACTTGAGATTTGTCAATCTTGGCGTCAGTGAGAACACGGTCGACAGGCTGGATGGTGGAG 8829 Query 7226 CGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCA 7285 ||||| | ||| || || || || ||||| || |||||||| | || |||||||| Sbjct 8830 CGGAAAAGATCCTGGCAAAGCTCTTCGAAACGGGCCCGGGTAATAGGGGTGTAGAAATCG 8889 Query 7286 ACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGC 7345 | || ||| ||| |||||||| ||||| || || || || | ||||| | || ||| Sbjct 8890 ATACCCTCGAATAGAGAATCAATCTCAATCGTAGTCTGAGCTGCAGAAGAGAGGGTGCGC 8949 Query 7346 TTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACG 7386 || || || || || || || || | |||||| ||||| || Sbjct 8950 TTGGCACGTTCGCAAGCAGTACGGAGACGACGCAGGGCGCG 8990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634843314408920