Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq752 277 2e-69 seq31 111 2e-19 >seq752 Length=11106 Score = 277 bits (306), Expect = 2e-69 Identities = 1117/1738 (64%), Gaps = 41/1738 (2%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| | ||||| || ||| ||||||| || || ||||||| ||| Sbjct 5526 CCCCAGCACATGATTATGCGCGTTGCGGTCGGTATTTGGGGAGACAATATTGAGCGCGTT 5467 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 |||||||| ||| || |||||| | | |||| |||||| |||| || |||||| Sbjct 5466 TTGGAGACCTACCACCTCATGTCCAGCAAGCTCTTCACCCACGCCTCACCTACACTCTTC 5407 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 ||||||||||| || || |||| |||||||| | | | ||||| || Sbjct 5406 AACGCTGGTACCCCCCAGTGTCAGCTGTCTTCCTGTTTCCTAGTCGACATGAAGGACGAC 5347 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 || ||||||| |||| |||||||| |||||| ||||| ||| ||||||| Sbjct 5346 AGCATTGATGGCATCTACGACACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGT 5287 Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAAT 111911 || ||||| || || |||| || | || | | ||| ||| || || || Sbjct 5286 GGAATCGGCTTGAACGTCCACCGCATCCGTGCTACCGGCTCTTACATTGCCGGCACCAAC 5227 Query 111912 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 111971 ||| ||| | || || ||||| ||||||||||| || ||| ||| || | || || Sbjct 5226 GGTACATCCAACGGCATCATTCCCATGCTTCGCGTCTTCAACAACACTGCCAGATACGTT 5167 Query 111972 AACCAAGCTGGGCG-TCGCAAGGGATCTATCGCAGT------CTATCTTGAGCCATGGCA 112024 |||| ||||| | |||| || || ||| | ||| || ||||| ||||| Sbjct 5166 GACCA----GGGCGGTAACAAGCGACCTGGTGCATTTGCCATCTACCTCGAGCCTTGGCA 5111 Query 112025 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTG 112084 ||| || | | || || ||||| ||||| ||||| ||| | || || || || Sbjct 5110 CGCAGACGTGTTCGACTTTCTTGATTTGCGAAAGAACCACGGTAAGGAAGAAAATCG-TG 5052 Query 112085 C-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 112143 | ||||| |||||| ||||| ||||| |||||||||||||||||| | || || ||| Sbjct 5051 CTCGCGACCTCTTCCTTGCTCTGTGGATCCCAGATCTCTTCATGAAGCGCGTCGAAAAGA 4992 Query 112144 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTG 112203 || ||||| | ||| | ||||| || || || || || | ||| | || | Sbjct 4991 ACGGGGATTGGACCCTCATGTGTCCCAACGAGTGCCCTGGCCTGGCTGATTGCTATGGCG 4932 Query 112204 AGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCG-GGCGACTGCGACGGTG 112262 |||| ||||| || |||||| |||||| ||| || | || ||| | ||| | Sbjct 4931 AGGAATTTGAGGCTCTCTACGAAAAGTATGAGCGTGAGGGCCGTGGCCGC-AAGACTATT 4873 Query 112263 CCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATA 112321 | || | || | | ||| | | || ||| |||| || ||||| || || | || | Sbjct 4872 CGTGC-CCAGAAGCTCTGGTACTCCATCCTCGAGTCCCAGACCGAAACGGGCAACCCCTT 4814 Query 112322 TATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAA 112381 |||||| ||||| || ||||| ||| |||||| || || ||||| |||| || Sbjct 4813 TATGCTGTACAAGGATGCCTGCAACAGAAAGAGCAACCAGAAGAACCTGGGAACCATTCG 4754 Query 112382 GAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTG 112441 || |||||||| || || || ||| | || | | | |||||| ||||| || Sbjct 4753 CAGCTCCAACCTGTGCACGGAGATCATTGAGTACTGTGCCCCTGATGAGGTTGCTGTTTG 4694 Query 112442 TAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGAC-ATTTGATT 112500 ||| | || || | || || || | || || | | | | || | | | || | Sbjct 4693 CAACTTGGCCTCTCTTGCCCTGCCTGCCTTCGTCGA-CTACAAAGAAGGCCGCTACGACT 4635 Query 112501 ATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATA 112560 | || |||||||| || || || ||| ||||| |||| | ||||| Sbjct 4634 TCCAGAAGCTCCACGAGGTCACTCAAGTGGTCGTCCGTAACCTCAACAAGATCATTGACG 4575 Query 112561 GAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTC 112620 || ||||||| ||||| ||||| || || ||| |||| || || || ||| Sbjct 4574 TCAACCATTACCCCATTGAGGAGGCTCGCAACAGCAACATGCGACATCGACCCATCGGTG 4515 Query 112621 TCGGTGTCCAAGGTCTCGCGGATG-TATTCATTCTTTGTCGCCACGCATTTGATTCCGAC 112679 | ||||| || ||||| || || | | ||| | || || ||| | || || || | Sbjct 4514 TTGGTGTTCAGGGTCTTGCTGACGCTTTTCTTGCTCTG-CGCATGCCCTTCGAGTCTCCC 4456 Query 112680 GAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGCG 112739 || || || |||| || || || ||||| || || ||||| || || || Sbjct 4455 GAGGCCCGTGAGCTCAACAAGCAGATCTTCGAGACCATCTACCACGCTGCCCTGACAGCC 4396 Query 112740 AGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCA 112799 | ||| |||| | | | || || || ||||| |||| ||||| || || Sbjct 4395 TCTCTTGAGCTGGCCAAAGAGCAAGGCCCCTACTCTACCTTCAAGGGCTCTCCCGCCTCG 4336 Query 112800 CAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAG-CTTC-----ACTACGAC 112853 |||| | |||||||| || |||| |||| || |||| |||| | || Sbjct 4335 GAAGGTATTCTTCAATTCGACATGT-GGAATGT-----CAAGCCTTCTGAGTTATGGGAG 4282 Query 112854 TGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTT--TGATGG 112911 |||||| ||| ||||| | ||||||||| | ||| |||| ||| || || || | | Sbjct 4281 TGGGACAGTCTGAAGGAGCAGATCAAGGAGCACGGTATTCGCAAC--TCGTTGCTGCTCG 4224 Query 112912 CACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCT 112971 | || ||||| || || || ||| | ||||| ||||||| ||||| |||||||| || | Sbjct 4223 CTCCCATGCCCACCGCATCGACCTCGCAAATTCTGGGTAACAATGAGTGCTTTGAGCCAT 4164 Query 112972 ACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGC 113031 ||||| | ||||| || | | | | | | || || || || | | |||||| Sbjct 4163 ACACGTCCAACATTTACCAGCGCCGTGTCTTGGCTGGTGAATTCCAGGTCGTCAACCCCT 4104 Query 113032 ATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGG 113091 ||| | | || ||| || || ||||||||||| | | |||||| | | ||| Sbjct 4103 GGCTCCTCAAGGATCTCGTCGACATGGGTCTCTGGTCTGATGCCATGAAGAACCGCATCA 4044 Query 113092 TGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAAGTTGT 113151 | | | |||||||||||| || || |||| || | || || ||| | | Sbjct 4043 TTGCCGAGAATGGTTCCATTCAGAACATCCCCAATATCCCCGCCGACATCAAGGCTCTCT 3984 Query 113152 ACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTC 113211 | || |||||||| || | |||| || | |||||||| ||||| ||| Sbjct 3983 ATAAGACTGTTTGGGAGATTTCTCAGCGTCATGTTATCCAGATGGCCGCCGATCGCGGTG 3924 Query 113212 GCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAGTCCAACGATGTCCAA 113269 ||| || || | |||| ||| | || | |||| | ||| || ||| ||| Sbjct 3923 CCTTTATCGACC--AGTCCCAGTCGCTCAACGTTCACATGAAGGATCCTACTATGGGCAA 3866 Query 113270 GCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTAC 113327 | || | ||||||||| | | |||||| ||||||||| ||||| ||||| ||| Sbjct 3865 GATCACCTCTATGCACTTTGCTGGCTGGAAGTTGGGTCTCAAGACGGGCATGTACTAC 3808 >seq31 Length=45476 Score = 111 bits (122), Expect = 2e-19 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 102203 TGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGG 102262 ||| ||||| ||||||||| ||| |||| | | |||| |||||||||||||| || Sbjct 39665 TGTGGAGGGCATCTTCTTCAGCGGTGCCTTTGCCTCGATTTTCTGGCTCAAGAAGCGTGG 39724 Query 102263 TCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCA 102322 ||| |||||||||||| |||||| ||||| |||||||| ||||| ||||| | ||| Sbjct 39725 TCTGATGCCAGGTCTCACCTTCTCTAACGAACTTATCTCCCGTGATGAGGGTTTGCACAC 39784 Query 102323 AGAGTTTGC 102331 ||| ||||| Sbjct 39785 AGACTTTGC 39793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620459473373360