Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq752 244 1e-59 seq524 111 2e-19 >seq752 Length=11106 Score = 244 bits (270), Expect = 1e-59 Identities = 1096/1705 (64%), Gaps = 55/1705 (3%) Strand=Plus/Plus Query 109378 AATTGGATTGGTCGAGCTTTCGCCTTCGAGCGAAGATAATACATACCCGTTTTGAGACCA 109437 || ||||| ||| ||| |||| || ||| | || ||||| ||||| |||||||| Sbjct 3773 AACTGGATGGGTGCAGCAGCAGCCTGCGTGCGCAAGTAGTACATGCCCGTCTTGAGACCC 3832 Query 109438 GCCTTCCATGCGTACATA-TGCATTGAAGAGAGTTTGGAAAGTGTCGGACTCTCCATAAA 109496 |||||| || || | ||||| || | || ||| | || ||| || ||| Sbjct 3833 AACTTCCA-GCCAGCAAAGTGCATAGAGGTGATCTTGCCCATAGTAGGATCCTTCATGTG 3891 Query 109497 CAAGTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGAT 109556 | ||| | |||||| ||||| ||||| || ||| ||||| || ||||| | ||| | Sbjct 3892 AACGTTGAGCGACTGGGACTGGTCGATAAAGGCACCGCGATCGGCGGCCATCTGGATAAC 3951 Query 109557 ACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTC 109616 | || ||| ||||| |||||||| || | | |||||| || |||| || | Sbjct 3952 ATGACGCTGAGAAATCTCCCAAACAGTCTTATAGAGAGCCTTGATGTCGGCGGGGATATT 4011 Query 109617 CACGATGTTTTGAATAGAGCCACCAGCCTTCACCATGA---GATCCTTCATCTCTTTCGA 109673 |||||| ||||| || |||| || | |||| | | |||||| | | || Sbjct 4012 GGGGATGTTCTGAATGGA---ACCATTCTCGGCAATGATGCGGTTCTTCATGGCATCAGA 4068 Query 109674 CCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACC 109733 ||||||||| | | |||||| | | || |||||| || |||||||| Sbjct 4069 CCAGAGACCCATGTCGACGAGATCCTTGAGGAGCCAGGGGTTGACGACCTGGAATTCACC 4128 Query 109734 AGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCC 109793 ||| | || || |||| ||||| | |||||| || || || ||||||||||| || Sbjct 4129 AGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCACTCATTGTTACC 4188 Query 109794 TAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACC 109853 || ||||| | || || || |||||||||||||| | || | ||| || | ||| Sbjct 4189 CAGAATTTGCGAGGTCGATGCGGTGGGCATGGGAGCGAGCAGCAACGAGTTGCGAATACC 4248 Query 109854 CTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTC 109913 | | ||| | | |||| || |||||| || | | ||| | || || Sbjct 4249 GTGCTCCTTGATCTGCTCCTTCAGACTGTCCCACTC----CCATAACTCAGA--AGGCTT 4302 Query 109914 ACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTC 109973 ||| |||||| || |||||| | ||| || | || ||||| |||||||| | Sbjct 4303 GACATTCCACATGTCGAATTGAAGAATACCTTCCGAGGCGGGAGAGCCCTTGAAGGTAGA 4362 Query 109974 GTACGACCCCTCAACCTCGGCCAACTCGGATGA-AGCCTCT-AGTGCCGCATGATACATA 110031 ||| | || | | | ||||| ||| | || || || | || || || || || || Sbjct 4363 GTAGGGGCCTTGCTCTTTGGCCAGCTC--AAGAGAGGCTGTCAGGGCAGCGTGGTAGATG 4420 Query 110032 GTCTCAAAAATATGAGCATTCATGAGG---CGAGACTCTTCACAGTCGAAGGGAAGACCA 110088 ||||| || || || || |||| || | ||| | | |||||||| | | Sbjct 4421 GTCTCGAAGATCTGC---TTGTTGAGCTCACGGGCCTCGGGAGACTCGAAGGGCATGCG- 4476 Query 110089 CAAAG-AATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCAT 110147 || || || ||| | || || |||||||||||||| | ||| ||||| ||||| ||| Sbjct 4477 CAGAGCAAGAAAAGCGTCAGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCAT 4536 Query 110148 GTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATT 110207 ||| | ||||| || | ||||||| |||| ||| |||| | ||||| || Sbjct 4537 GTTGCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACGTCAATGATCTTGTTGAGGTT 4596 Query 110208 CTT--CGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCC 110265 || | || | | |||| || ||||| || | | | ||| | | | ||| Sbjct 4597 ACGGACGAC-CACT-TGAGTGACCTCGTGGAGCTTCTGGAAGTCGTA-GCGGCCTTCTTT 4653 Query 110266 TTATT-GACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTT 110324 || | ||| | || || |||| ||| || | ||||| |||| | ||| || Sbjct 4654 GTAGTCGACGAAGGCAGGCAGGGCAAGAGAGGCCAAGTTGCAAACAGCAACCTCATCAGG 4713 Query 110325 GTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTT 110384 | | ||| || | || ||||| |||| |||||| || |||| |||| |||||| Sbjct 4714 GGCACAGTACTCAATGATCTCCGTGCACAGGTTGGAGCTGCGAATGGTTCCCAGGTTCTT 4773 Query 110385 CTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGT 110444 ||| || || |||||| |||||||| || ||||| | ||| | || ||||| || Sbjct 4774 CTGGTTGCTCTTTCTGTTGCAGGCATCCTTGTACAGCATAAAGGGGTTGCCCGTTTCGGT 4833 Query 110445 CTGTGACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGT--TGCGTTAGCGA- 110500 ||| |||| ||| |||| | ||| | | || | ||| | | ||| |||| || | Sbjct 4834 CTGGGACTCGAGGATGGAGTACCAGAGCTTCTG-GGCACGAATAGTCTTGCG---GCCAC 4889 Query 110501 GACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAA 110560 | || || ||| ||||| ||| | |||||||||||| || || ||||| | Sbjct 4890 GGCCCTCACGCTCATACTTTTCGTAGAGAGCCTCAAATTCCTCGCCATAGCAATCAGCCA 4949 Query 110561 GACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCA 110620 | || || || |||||| | ||||| ||||| || || || || | ||||| Sbjct 4950 GGCCAGGGCACTCGTTGGGACACATGAGGGTCCAATCCCCGTTCTTTTCGACGCGCTTCA 5009 Query 110621 TGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCAC 110680 |||| || || || ||||||| || ||| ||||| || |||| ||||| | || Sbjct 5010 TGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGATTTTCTTCCTTAC 5069 Query 110681 CTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGA 110740 | ||||| || | || | |||||| | | || | |||||| || ||||| |||| Sbjct 5070 CGTGGTTCTTTCGCAAATCAAGAAAGTCGAACACGTCTGCGTGCCAAGGCTCGAGGTAGA 5129 Query 110741 CAGC-GATG-----GATCCCTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCAT 110794 || ||| | || ||| ||| |||||| ||| || | || ||| | Sbjct 5130 TGGCAAATGCACCAGGTCGCTT---GTTACCGCCCTGGTCAACGTATCTGGCAGTGTTGT 5186 Query 110795 TGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGG 110854 ||||||| | ||||| ||||| || || | |||| ||| || || || ||| | Sbjct 5187 TGAAGACGCGAAGCATGGGAATGATGCCGTTGGATGTACCGTTGGTGCCGGCAATGTAAG 5246 Query 110855 ACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTT 110914 | | ||||| ||| ||||| | || || || ||||| ||| ||| || Sbjct 5247 AGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGATTCCACCAGCCATCTTGGAGATCA 5306 Query 110915 GTGCACA-CTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATT 110973 ||||| ||| |||| || | || || |||||||| || |||| || | | | Sbjct 5307 TGGCACAGGTCT-TGAGAGTGTCGTAGATGCCATCAATGCTGTCGTCCTTCATGTCGACT 5365 Query 110974 AGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCA 111033 || || || ||||||| |||| | || || || || |||||||||||||||| || Sbjct 5366 AGGAAACAGGAAGACAGCTGACACTGGGGGGTACCAGCGTTGAAGAGTGTAGGTGAGGCG 5425 Query 111034 TGAATGAACAGACCTTG--GGACAT 111056 || ||| ||| |||| |||||| Sbjct 5426 TGGGTGA--AGAGCTTGCTGGACAT 5448 >seq524 Length=15119 Score = 111 bits (122), Expect = 2e-19 Identities = 278/413 (67%), Gaps = 16/413 (4%) Strand=Plus/Minus Query 11505 ATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGC 11564 ||||||||||||||| || | ||||| | || || || || | ||||| ||| |||| Sbjct 10544 ATCGAAACGACCTGGTCGCATGAGAGCCTTGTCCAGGATGTCTGCGCGGTTGGTACCGGC 10485 Query 11565 AATGACTACAATGCCAG-TCTC-ATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 | ||| |||| || | || | | ||| ||| || |||||||| || || | ||||||| Sbjct 10484 CAAGACGACAA--CCTGCTCACGAGTGTTGAACCCATCCATTTCCGTCAGGATCTGGTTG 10427 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTT------CTT- 11675 | ||| || ||||| |||||| | || | | ||| | ||| || Sbjct 10426 AGCGTGGCCTCTCGCTCGTCGTTGCCACCAAATCCTCGT-CCGCTCTCTTGACGAGCTCG 10368 Query 11676 ACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTC 11735 ||| | || || || || || || || | ||| || || || ||| ||| | | Sbjct 10367 ACCAATGGCATCGATTTCGTCAATAAAGATGATGCAAGGAGCATTCTTGCGTCCCTCTGC 10308 Query 11736 GAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG--CG 11793 ||||| || || || | || |||||||| || ||||| || ||||| | | | Sbjct 10307 AAAAAGATCTCGAACTCTTGACGGACCAACACCGACAAACATTTCCACGAATTCGGAACC 10248 Query 11794 GCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTC 11853 || | | ||||| |||||||| |||||| ||||| |||| ||||| || ||| Sbjct 10247 GCTCA-CGCTGAAA-AAGGGAACGCCAGACTCGCCAGCAGTGGCCTTTGCGAGAAGCGTC 10190 Query 11854 TTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906 ||||| ||||| || | || ||||||| ||||||||||| ||||| || || Sbjct 10189 TTACCAGTACCCGGAGGGCCGGCGAGAATAGCGCCACGGGGAATCTTTGCTCC 10137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588707552101400