Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq752 277 2e-69 seq31334 89.7 6e-13 >seq752 Length=11106 Score = 277 bits (306), Expect = 2e-69 Identities = 1167/1809 (65%), Gaps = 53/1809 (3%) Strand=Plus/Plus Query 105596 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATA-TGCATAGAAGAGAGCTT 105654 |||||||| || |||||||| || ||||| || || | |||||||| | || ||| Sbjct 3809 TAGTACATGCCCGTCTTGAGACCCAACTTCCA-GCCAGCAAAGTGCATAGAGGTGATCTT 3867 Query 105655 GGACATCGTTGGACTTTCCATGAAAAGATTCAT--ACTTTGACTCTGGTCAATGAAGCGA 105712 | ||| || ||| | |||| || || | ||| |||| |||| || ||| | Sbjct 3868 GCCCATAGTAGGATCCTTCATGTGAACGTTGAGCGACTGGGACT--GGTCGATAAAGGCA 3925 Query 105713 CCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGATTTCCCACACTGTGCGGTAG 105772 || || | || ||||| | || |||| | || ||||| || || ||| Sbjct 3926 CCGCGATCGGCGGCCATCTGGATAACATGACGCTGAGAAATCTCCCAAACAGTCTTATAG 3985 Query 105773 AGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACC---CCCCGCCTTG 105829 ||| |||||| || | ||||||| | ||| || ||||| ||||| | | || || Sbjct 3986 AGAGCCTTGATGTCGGCGGGGATATTGGGGATGTTCTGAATGGAACCATTCTCGGCAATG 4045 Query 105830 ACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGA 105889 | || | | |||||| | | ||||| ||||| || | |||||| |||| ||| Sbjct 4046 A---TGCGGTTCTTCATGGCATCAGACCAGAGACCCATGTCGACGAGATCCTTGAGGAGC 4102 Query 105890 TGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTG 105949 |||||| | | || || || || | | | | | | || ||||| | |||| Sbjct 4103 CAGGGGTTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTG 4162 Query 105950 TAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGT 106009 || || |||||||| ||||| ||||||| ||||| | ||| || || || ||||| || Sbjct 4163 TATGGCTCAAAGCACTCATTGTTACCCAGAATTTGCGAGGTCGATGCGGTGGGCATGGGA 4222 Query 106010 GCCATCA--AAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCC 106067 || | || || || ||| |||| ||| | |||||||| | ||||| ||| |||| Sbjct 4223 GCGAGCAGCAACGA--GTTGCGAATACCGTGCTCCTTGATCTGCTCCTTCAGACTGTCCC 4280 Query 106068 AGTCG--TAGTTGAGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGA 106125 | || || | || || || || |||| |||| || |||||||| | |||| || Sbjct 4281 ACTCCCATAACTCAGAA-GGCTTGACATTCC-ACATGTCGAATTGAAGAATACCTTCCGA 4338 Query 106126 CGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGC 106185 | |||||| |||| || || |||| ||||| ||| |||| ||| || | Sbjct 4339 GGCGGGAGAGCCCTTGAAGGTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCA-AGAGAGG 4397 Query 106186 CTC-CAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCAT 106244 || ||||| ||||| || ||||| || ||||| | || | ||| ||| || Sbjct 4398 CTGTCAGGGCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTCACGGGCCTCGG 4457 Query 106245 CTGAATCAAATGCGTAGCGGCACAA-AATAAATACATCCGCGAGACCTTGAACACCCAAA 106303 || || || | ||| || | || ||| | || || ||||| |||||||| | | Sbjct 4458 GAGACTCGAAGGGCATGCG-CAGAGCAAGAAAAGCGTCAGCAAGACCCTGAACACCAACA 4516 Query 106304 CCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTG 106363 || || |||| |||||||| || || || || ||||| ||| ||| || | Sbjct 4517 CCGATGGGTCGATGTCGCATGTTGCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACG 4576 Query 106364 TCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAA 106423 ||||||| ||| || || | || | | |||| || || || || | | Sbjct 4577 TCAATGATCTTGTTGAGGTTACGGACGACCACTTGAGTGACCTCGTGGAGCTTCTGGAAG 4636 Query 106424 TCAAAAGTGCGAGTCTCTTCATT-GACATACTTTGGAAGGGCGATTGATGCCAAATTGCA 106482 || | || ||| | | | ||| | || ||||| | || ||||| ||||| Sbjct 4637 TCGTAGCGGCCT-TCTTTGTAGTCGACGAAGGCAGGCAGGGCAAGAGAGGCCAAGTTGCA 4695 Query 106483 AACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTT 106542 |||||| |||||| | |||||| | || || || |||| |||||| || Sbjct 4696 AACAGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAGGTTGGAGCTGCG 4755 Query 106543 AATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTA 106602 ||| || |||| ||||| ||||| |||||| ||||||| ||||||||||| ||||| | Sbjct 4756 AATGGTTCCCAGGTTCTTCTGGTTGCTCTTTCTGTTGCAGGCATCCTTGTACAGCATAAA 4815 Query 106603 GGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTA 106661 ||| | ||||| || ||||| |||| ||| || | | ||| | | || | ||| | Sbjct 4816 GGGGTTGCCCGTTTCGGTCTGGGACTCGAGGATGGAGTACCAGAGCTTCTG-GGCACG-- 4872 Query 106662 CAATGGCGTT--GGCC-CGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCT 106718 ||| | || |||| || ||||| ||| |||||| |||||| || ||||| |||| Sbjct 4873 -AATAGTCTTGCGGCCACGGCCCTCACGCTCATACTTTTCGTAGAGAGCCTCAAATTCCT 4931 Query 106719 CACCCACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCA 106777 | ||| || || | || || || || || ||||| | || | ||| | || Sbjct 4932 C-GCCATAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGGGTCCAATCCCCG 4990 Query 106778 CCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA 106837 || || || ||||||||||| || ||||| |||||||| | ||||| || | | Sbjct 4991 TTCTTTTCGACGCGCTTCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGA 5050 Query 106838 CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCG 106897 ||| ||||| | ||| ||||| ||| || ||||| || || | | || ||| Sbjct 5051 GCACGATTTTCTTCCTTACCGTGGTTCTTTCGCAAATCAAGAAAGTCGAACACGTCTGCG 5110 Query 106898 TGCCATGGCTCAAGATAG------ACTGCGATAGATCCCTT-TCGACGCCCAGCTTGATT 106950 ||||| ||||| || ||| | ||| || || ||| | ||||| || | Sbjct 5111 TGCCAAGGCTCGAGGTAGATGGCAAATGCACCAGGTCGCTTGTTACCGCCC----TGGTC 5166 Query 106951 TACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACC 107010 || || | || ||| ||| || ||||||||||| ||||| || || | ||| ||| Sbjct 5167 AACGTATCTGGCAGTGTTGTTGAAGACGCGAAGCATGGGAATGATGCCGTTGGATGTACC 5226 Query 107011 ATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACC 107070 || || || ||| ||| | || | | |||| || || || || || Sbjct 5227 GTTGGTGCCGGCAATGTAAGAGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGATTCC 5286 Query 107071 CCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGA 107130 |||||| ||| ||||| ||||| | | ||||| | ||||| || | || Sbjct 5287 ACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATGCCATCAATGCT 5346 Query 107131 GTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATT 107190 ||| ||||| || ||| ||||| || |||| ||| || |||||||| || Sbjct 5347 GTCGTCCTTCATGTCGACTAGGAAACAGGAAGACAGCTGACACTGGGGGGTACCAGCGTT 5406 Query 107191 GAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCC 107248 |||||| || |||| ||||| ||| | | |||| |||||| || ||| |||||| Sbjct 5407 GAAGAGTGTAGGTGAGGCGTGGGTGA--AGAGCTTGCTGGACATGAGGTGGTAGGTCTCC 5464 Query 107249 AAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGG 107308 || || ||||| | || || || |||| || || ||||||| ||||| ||| Sbjct 5465 AAAACGCGCTCAATATTGTCTCCCCAAATACCGACCGCAACGCGCATAATCATGTGCTGG 5524 Query 107309 GGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTCTTCTCAAGGGTTTTGAG 107367 ||| || | | |||| | ||| ||||||| | || |||| || || |||| Sbjct 5525 GGTCGCTCGACAATCTTGCCGTTGAGTTTGAGAAGATATGATC-TCTCCAGAGTCTTGAA 5583 Query 107368 ACCAAAGTA 107376 |||||||| Sbjct 5584 GCCAAAGTA 5592 >seq31334 Length=230 Score = 89.7 bits (98), Expect = 6e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516 || ||||| | || ||||| ||||||||||| |||||| | |||||| | Sbjct 78 GGCAGGGCAAGAGAGGCCAAGTTGCAAACAGCAACCTCATCAGGGGCACAGTACTCGATG 137 Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 || || || |||| |||||| || ||| || |||| ||||| ||||| |||||| || Sbjct 138 ATCTCCGTGCACAGGTTGGAGCTGCGAATGGTTCCCAGGTTCTTCTGGTTGCTCTTTCTG 197 Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGG 106605 ||||| ||||||||||| || || |||| Sbjct 198 TTGCAGGCATCCTTGTACAGAATAAAGGG 226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589711894126120