Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_015250.1 Length=159801 Score E Sequences producing significant alignments: (Bits) Value seq20645 111 2e-19 >seq20645 Length=266 Score = 111 bits (122), Expect = 2e-19 Identities = 135/180 (75%), Gaps = 7/180 (4%) Strand=Plus/Plus Query 137482 ATAGCAGATGATGTTTCATTAATCGAGTCCAAGCTATCACCAGATTCAATCAGTACACAA 137541 |||| |||| ||| | || || || ||||||||||| ||| ||||||||||||| || Sbjct 80 ATAGATGATGCTGTCGCGTTGATGGAATCCAAGCTATCGCCACATTCAATCAGTACGCAT 139 Query 137542 GAACTAAATTGACGTGTTGGTGTACGTACTCCGGCCATGATTGGAGTGGGTAGACTGATT 137601 || ||||| ||||| || || ||||| ||||| |||||||| || || || || ||| Sbjct 140 GAGCTAAACTGACGAGTCGGCGTACGCACTCCCGCCATGATAGGCGTTGGCAG--TGAAA 197 Query 137602 TGCTTTAA---TGAAACTGCGTCATAAAAGTCTTTAACATATTGTAAACG-TTTGCTTTT 137657 | ||| || || || ||||| ||||| ||||| || ||||| | ||| | |||||| Sbjct 198 T-CTTAAAAGTCGATACCGCGTCGTAAAAATCTTTGACGTATTGCAGACGCGTAGCTTTT 256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511002185386280