Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq106 165 7e-35 seq23831 109 4e-18 seq326 105 5e-17 seq1132 95.1 1e-13 seq1405 86.0 5e-11 >seq106 Length=32284 Score = 165 bits (182), Expect = 7e-35 Identities = 466/711 (66%), Gaps = 11/711 (2%) Strand=Plus/Minus Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954 || || |||||||| | |||||||||||| | ||||| || | || || |||| || Sbjct 8987 GCCCTGCGTCGTCTCCGTACTGCTTGCGAACGTGCCAAGCGCACCCTCTCTTCTGCAGCT 8928 Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCG 552014 || || || ||||| | ||||| |||| ||||| || |||| | || |||||| | Sbjct 8927 CAGACTACGATTGAGATTGATTCTCTATTCGAGGGTATCGATTTCTACACCCCTATTACC 8868 Query 552015 AGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAA 552074 ||||| || ||||| |||| ||||| || | || || | || || || Sbjct 8867 CGGGCCCGTTTCGAAGAGCTTTGCCAGGATCTTTTCCGCTCCACCATCCAGCCTGTCGAC 8808 Query 552075 CAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGT 552134 | ||| | | || | |||||||| ||||| |||| ||||| ||||| | |||||| Sbjct 8807 CGTGTTCTCACTGACGCCAAGATTGACAAATCTCAAGTTCATGAGATTGTCTTGGTTGGT 8748 Query 552135 GGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCT--TATTTCAATGGTAAAA 552192 || || || | ||||| ||| | |||| | | | | || || || || ||| Sbjct 8747 GGTTCCACCCGTATTCCCCGAATCCA-GAAAC-TCATCTCCGACTACTTTAACGGCAAAG 8690 Query 552193 AATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAG 552252 | || | | | || || |||||||||||||| || |||||||| | || || | Sbjct 8689 AGCCCAACAAGTCTATCAACCCTGATGAGGCTGTTGCGTACGGTGCCGCTGTCCAGGCTG 8630 Query 552253 CTATTCTTTCTGGACAAACTGATGAAAAA-----CTACAAAATATTGTACTTGTAGATGT 552307 |||| || |||||| | ||| | || | || |||| |||| | | || || Sbjct 8629 CTATCCTGTCTGGAGACACTTCTTCCAAGTCTACCAACGAAATCTTGT--TGCTTGACGT 8572 Query 552308 TACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAG 552367 | ||| | ||||| ||| | || || | || || || ||||| || || || | | Sbjct 8571 CGCGCCTTTGTCTCTGGGTATTGAGACCGCCGGTGGAATGATGACGAAGCTCATTCCTCG 8512 Query 552368 AAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAAC 552427 || || || ||||| || || ||| || || || || | || || || || | Sbjct 8511 TAACACAACCATTCCAACCAAGAAGTCTGAGGTTTTCTCGACCTTCTCTGACAACCAGCC 8452 Query 552428 TGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACT 552487 || || ||||| | ||||| || || || | ||| || || || || | | Sbjct 8451 TGGGGTGCTCATTCAGGTCTTTGAGGGCGAGCGACAGCGCACCAAGGACAACAACCTCAT 8392 Query 552488 TGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGT 552547 || | ||| | | || ||||| || ||||| ||||| || || || |||||||| Sbjct 8391 GGGCAAGTTTGAGCTTACTGGCATTCCCCCCGCTCCCCGTGGTGTTCCTCAGATTGAAGT 8332 Query 552548 TACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 ||| || ||| ||||||||||||| || |||||||| ||||| ||| || Sbjct 8331 TACCTTTGATCTCGATGCCAATGGTATCATGAATGTGTCTGCTGTTGAAAA 8281 Score = 143 bits (158), Expect = 2e-28 Identities = 328/487 (67%), Gaps = 10/487 (2%) Strand=Plus/Minus Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 |||||||| ||||||| || |||||| ||||||||||||||| ||| | |||| || Sbjct 9738 GAAATTATCCCCAATGAGCAGGGTAACCGAACTACTCCATCTTTTGTCGCATTCAATGAC 9679 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACT 550174 || || | | | |||| ||||| || || |||| | | || || ||| ||| || Sbjct 9678 ACCGAGCGTCTGATTGGCGATGCTGCCAAGAATCAGGTCGCTATGAACCCTCACAACACC 9619 Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234 | || || || |||||||| ||||| | | || | ||| || || ||||| ||| Sbjct 9618 GTCTTCGACGCCAAACGTTTGATTGGCCGCAAGTTCGAGGATCCGGAGGTCCAGGCTGAT 9559 Query 550235 ATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT--- 550291 |||||||| | || ||| | | || | || ||||| ||| ||||| | Sbjct 9558 ATGAAGCACTTTCCCTTCAAGGTGATTGAGAAACAAGGCAAACC-TATGGTGAAGGTCGA 9500 Query 550292 ACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATG 550351 | ||| |||| | || |||| |||| ||| |||| || || ||| | | || Sbjct 9499 ATTCA--AAGGCGAAGAGAAGGAATTCACACCTGAAGAAATATCTTCCATGATCCTCATC 9442 Query 550352 AAAATGAAACAAACAGCC-AGTGCTTTTGTTGGTCA-AGAAGTTACGGATGCAGTAATAA 550409 || ||| | | ||| || || || |||| || | || || | || || | | Sbjct 9441 AAGATGCGCGAGATTGCCGAGGGC--TTCTTGGGCACACCGGTCCCGAACGCTGTCGTCA 9384 Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469 |||| || || || || || ||||| || || || ||||| || || || || || |||| Sbjct 9383 CTGTTCCCGCCTACTTCAACGACTCTCAGCGGCAGGCTACAAAGGACGCCGGTCGCATTG 9324 Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGAC 550529 | ||||| || || |||||||| ||||| || |||||||| || || |||| ||||| | Sbjct 9323 CCGGACTCAACGTCCTTCGTATCATCAACGAGCCTACTGCCGCCGCTATTGCTTATGGTC 9264 Query 550530 TTGATAA 550536 | || || Sbjct 9263 TCGACAA 9257 >seq23831 Length=243 Score = 109 bits (120), Expect = 4e-18 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 550390 AGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTAC 550449 |||| | || ||||| || ||||| |||||||| ||||| ||| |||||||||||||||| Sbjct 1 AGTTTCTGAAGCAGTTATTACTGTTCCAGCATACTTTAACGACGCACAACGTCAAGCTAC 60 Query 550450 TAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGC 550509 ||||| || || ||||| || | || || | ||||| |||||||| ||||| || Sbjct 61 AAAAGAAGCAGGTGAAATTGCAGGTTTAAAAGTAATGCGTATCATCAATGAGCCTACAGC 120 Query 550510 TGCTGCACTTGCATATGGACTTGATAAACA 550539 || || | || |||||| | || ||||| Sbjct 121 AGCAGCTTTAGCTTATGGATTAGACAAACA 150 >seq326 Length=20000 Score = 105 bits (116), Expect = 5e-17 Identities = 159/221 (72%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCT-AGAGTTCT 563315 ||||| || || ||||| | |||||||| || || ||||| || ||| || || | Sbjct 12311 AGACGAAGCACGAGATGCAAAGTACTTTCCTTCTGGATGTTGTAGTC-GCTCAGCGTGCG 12369 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 ||||| || || ||||||||||||||||||| |||||| || ||||| ||||| || Sbjct 12370 GCCGTCTTCTAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCGGGAGGGATTCCCTC 12429 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAG 563434 ||||| ||||| || ||| || | || || ||||||| || | | ||| | | Sbjct 12430 CTTATCCTGAATCTTGGATTTGACAGTGTCGATGGTATCAG-CAGATTCGACTTCCAAGG 12488 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | | ||| || ||||| | || || || |||||||||||| Sbjct 12489 TGATAGTCTTTCCAGTCAAGGTCTTGACAAAAATTTGCATA 12529 Score = 86.0 bits (94), Expect = 5e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 ||| ||||||||||| ||||| || ||| || |||||||| || || || || | Sbjct 12766 GAGGCGGAGTACAAGGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGCGAGGGTACG 12825 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 |||||| || || || || || || || | || ||||||||||||||||| ||||| Sbjct 12826 ACCATCTTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGATCAGGAGGAATACCTTC 12885 Query 563376 TTTATCTTGAATTTT 563390 ||||| ||||| || Sbjct 12886 CTTATCCTGAATCTT 12900 >seq1132 Length=6939 Score = 95.1 bits (104), Expect = 1e-13 Identities = 100/129 (78%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCA-AGCTACTAAAGATGCTGGACGTAT 550467 |||||||| || || |||||||| | || ||||| ||| || || |||||||| | || Sbjct 2776 ACTGTACCTGCCTACTTTAATGATGCTCAGCGTCAGAGC-ACCAAGGATGCTGGTCAGAT 2718 Query 550468 TGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 || || || |||||||| ||| | |||| || || ||||||||||| ||||| ||||| Sbjct 2717 CGCCGGTCTGAATGTTCTCCGTGTCGTCAACGAGCCCACTGCTGCTGCTCTTGCCTATGG 2658 Query 550528 ACTTGATAA 550536 ||||| || Sbjct 2657 CCTTGACAA 2649 >seq1405 Length=5050 Score = 86.0 bits (94), Expect = 5e-11 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 550004 GATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATT 550063 ||||| || ||||| || || ||||| || || ||| || || || ||||||||||| Sbjct 788 GATTTGGGTACCACGTACAGCTGTGTCGGCGTGATGCAGAAGGGCAAGGTTGAAATTATC 847 Query 550064 GCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACAT 550123 | ||| ||||| || ||| ||| |||||| || || || | ||||| || || | | Sbjct 848 GTCAACGATCAGGGAAACCGAATTACTCCTTCCTACGTCGCCTTCACTGATGAAGAGCGT 907 Query 550124 TTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGAT 550183 | |||||||| | || ||| | || ||| | | || |||||| || |||| |||| Sbjct 908 CTGGTTGGTGACTCCGCCAAAAACCAGGCCGCCGCCAACCCTACCCGAACCATTTATGAT 967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4027367672111870