Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_018087.3 Length=166687 Score E Sequences producing significant alignments: (Bits) Value seq20645 96.9 4e-15 >seq20645 Length=266 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/226 (70%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 142042 GCACGGATTGCACCACCGCCGATACCAATACCAGCACGTTTAGAAACATATTTTACAATA 142101 |||||||| ||| || |||||| |||||||| |||| || |||||||| ||| Sbjct 23 GCACGGATACGACCGGCGTTGATACCGATACCAGCGCGTTGGCTCACGTATTTTACGATA 82 Query 142102 GCTGATGTACTTTCAGTAATTGAATCTAGGCTATCGCCGGTTTCAATTAAAACACATGAA 142161 | ||||| | | | || ||||| | ||||||||| |||||| | || ||||| Sbjct 83 GATGATGCTGTCGCGTTGATGGAATCCAAGCTATCGCCACATTCAATCAGTACGCATGAG 142 Query 142162 CTAAATTGACGAGTTGGGGTACGAACACCGGCAAGAATAGGAGTAGGTAAACTAACTTGT 142221 ||||| |||||||| || ||||| || || || | ||||| || || | || | | Sbjct 143 CTAAACTGACGAGTCGGCGTACGCACTCCCGCCATGATAGGCGTTGGCAGTGAAA--TCT 200 Query 142222 TTTAAT--GATGTTGCATCATAAAAATCTTTTACGTATTGAATACG 142265 | || ||| || || ||||||||||| |||||||| | ||| Sbjct 201 TAAAAGTCGATACCGCGTCGTAAAAATCTTTGACGTATTGCAGACG 246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 533027342017560