Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15]
36,463 sequences; 36,098,533 total letters
Query= NC_018087.3
Length=166687
Score E
Sequences producing significant alignments: (Bits) Value
seq20645 96.9 4e-15
>seq20645
Length=266
Score = 96.9 bits (106), Expect = 4e-15
Identities = 158/226 (70%), Gaps = 4/226 (2%)
Strand=Plus/Plus
Query 142042 GCACGGATTGCACCACCGCCGATACCAATACCAGCACGTTTAGAAACATATTTTACAATA 142101
|||||||| ||| || |||||| |||||||| |||| || |||||||| |||
Sbjct 23 GCACGGATACGACCGGCGTTGATACCGATACCAGCGCGTTGGCTCACGTATTTTACGATA 82
Query 142102 GCTGATGTACTTTCAGTAATTGAATCTAGGCTATCGCCGGTTTCAATTAAAACACATGAA 142161
| ||||| | | | || ||||| | ||||||||| |||||| | || |||||
Sbjct 83 GATGATGCTGTCGCGTTGATGGAATCCAAGCTATCGCCACATTCAATCAGTACGCATGAG 142
Query 142162 CTAAATTGACGAGTTGGGGTACGAACACCGGCAAGAATAGGAGTAGGTAAACTAACTTGT 142221
||||| |||||||| || ||||| || || || | ||||| || || | || | |
Sbjct 143 CTAAACTGACGAGTCGGCGTACGCACTCCCGCCATGATAGGCGTTGGCAGTGAAA--TCT 200
Query 142222 TTTAAT--GATGTTGCATCATAAAAATCTTTTACGTATTGAATACG 142265
| || ||| || || ||||||||||| |||||||| | |||
Sbjct 201 TAAAAGTCGATACCGCGTCGTAAAAATCTTTGACGTATTGCAGACG 246
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 533027342017560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |