Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_018088.1 Length=104936 Score E Sequences producing significant alignments: (Bits) Value seq20645 95.1 8e-15 >seq20645 Length=266 Score = 95.1 bits (104), Expect = 8e-15 Identities = 166/242 (69%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 71101 CGTATGAATTACATCAAAGAGTGGTATGATGCAACAAGTACATTTGAGCTATCATTACCA 71160 ||| || | ||| ||||||| | || || || | || ||| || | ||| | ||| Sbjct 246 CGTCTGCAATACGTCAAAGATTTTTACGACGCGGTATCGACTTTTAAGATTTCACTGCCA 187 Query 71161 ACACCTATTATGGGTGGTGTACGTACTCCAACAAGACAATTTAGTAGTTGTGTAAAGATT 71220 || ||||| |||| || || ||||| || || | || ||||| || ||| |||| Sbjct 186 ACGCCTATCATGGCGGGAGTGCGTACGCCGACTCGTCAGTTTAGCTCATGCGTACTGATT 127 Query 71221 GACAGTGGCGATAGCCTAGATTCAATTAATGCCTCTTCAAGTTCAATTGTTAAGTATGTA 71280 || ||||||||||| | ||||| || || || | || || || || || || || Sbjct 126 GAATGTGGCGATAGCTTGGATTCCATCAACGCGACAGCATCATCTATCGTAAAATACGTG 67 Query 71281 TCCAAACGTGCAGGTATCGGTATCAATGTTGGCAAAATTCGTGCATTAGGAAGTCCTATA 71340 | |||| || |||||||||||||| | || || |||||||||||||| || || Sbjct 66 AGCCAACGCGCTGGTATCGGTATCAACGCCGGTCGTATCCGTGCATTAGGAAGCCCAATC 7 Query 71341 CG 71342 || Sbjct 6 CG 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 335521230486871