Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15]
36,463 sequences; 36,098,533 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq326 129 5e-25
>seq326
Length=20000
Score = 129 bits (142), Expect = 5e-25
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|| ||||| || ||||| || || || || ||||| ||||| | ||||| | |||| ||
Sbjct 12548 ACCAAATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCCAAAGTTCGGCCATCCTCG 12607
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
| |||||||| ||||| || | ||||| || || || ||||||||||| || ||||||
Sbjct 12608 AGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGA 12667
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
|| || |||||| | || | || || || | ||| ||||| | |||| || |||
Sbjct 12668 ATCTTAGCCTTTACATTATCGATTGTATCCGAAGATTCGACTTCCAATGTGATAGTCTTG 12727
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| || ||||| || || || ||||||||
Sbjct 12728 CCAGTCAAAGTCTTGACGAAGATCTGCAT 12756
Score = 102 bits (112), Expect = 6e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|||||||| || || || || || ||||| || || | ||| | | || || | |||
Sbjct 13083 TGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTGCGACCGTCCTCAAGCTGC 13142
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| || || || |||| |||||| || ||||| || || || || ||||| ||||| ||
Sbjct 13143 TTTCCAGCGAAGATCAGACGCTGCTGGTCGGGGGGGATTCCCTCCTTATCCTGAATCTTC 13202
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|| ||| | || | || ||||||| || || || ||||| | || ||||||||
Sbjct 13203 GACTTGACATTGTCAATGGTATCAGACGACTCGACCTCGAGAGTAATGGTCTTGCCGGTG 13262
Query 101447 AAAGTTTTTACAAATATCTGCATGGTTAC 101475
| || || || || || |||||||||||
Sbjct 13263 AGGGTCTTGACGAAGATTTGCATGGTTAC 13291
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396102296727291
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |