Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq752 444 1e-119 seq31 136 7e-27 seq31334 104 4e-17 seq29927 91.5 3e-13 >seq752 Length=11106 Score = 444 bits (492), Expect = 1e-119 Identities = 1158/1745 (66%), Gaps = 68/1745 (4%) Strand=Plus/Plus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || || ||||| | || |||||||||||| ||||| | ||||||||||| ||||| Sbjct 3767 ACGGTGAACTGGATGGGTGCAGCAGCAGCCTGCGTGCGCAAGTAGTACATGCCCGTCTTG 3826 Query 212613 AGGCCCTTGCCCCAGCCGTGCATGTGCATTGCTGTGAGTTTCTTCAGCTTAATATTCTGG 212672 || ||| |||||| | |||||| | |||| |||| | || || || Sbjct 3827 AGACCCAACTTCCAGCCAGCAAAGTGCATAGAGGTGA---TCTTGCCCATAGTA----GG 3879 Query 212673 TCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTG 212732 ||||| || || | ||| || ||||| |||||| || || | | | Sbjct 3880 --ATCCTT------CATGTGAACGTTGAGCGACTGGGACTGGTCGATAAAGGCACCGCGA 3931 Query 212733 TCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCT 212792 || |||||||| | || | || | ||| || | |||||| || ||||| ||| | Sbjct 3932 TCGGCGGCCATCTGGATAACATGACGCTGAGAAATCTCCCAAACAGTCTTATAGAGAGCC 3991 Query 212793 TTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGT---ATGGTCAGC 212849 |||| ||| | |||| |||||||||||| | || || | | ||| | | Sbjct 3992 TTGATGTCGGCGGGGATATTGGGGATGTTCTGAATGGAACCATTCTCGGCAATGATGCGG 4051 Query 212850 TGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGAGGG 212909 | | |||| | || |||||| ||| || | || ||||| || ||| Sbjct 4052 TTCTT---CATGGCATCAGACCAGAGACCCATGTCGACGAGATCCTTGAGGAGCCAGGGG 4108 Query 212910 TTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGC 212969 ||||| | |||||| ||||| | | || | | |||||||| ||| || ||||| ||| Sbjct 4109 TTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGC 4168 Query 212970 TCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACC 213029 || | || ||| ||||| |||||||| || | || || |||||||||||||| | | Sbjct 4169 TCAAAGCACTCATTGTTACCCAGAATTTGCGAGGTCGATGCGGTGGGCATGGGAGCGAGC 4228 Query 213030 AGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTG-CCCAGTCCCA 213088 || | ||| | | |||||||| ||| | | || ||| |||| ||||| Sbjct 4229 AGCAACGAGTTGCGAATACCGTGCTCCTTGATCTGCTCCTTCAGA-CTGTCCCACTCCCA 4287 Query 213089 TCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCT 213148 | |||| ||| ||| || ||||||||||| || || | || |||| Sbjct 4288 TAACTCAGA-AGG--------CTTGACATTCCACATGTCGAATTGAAGAATACCTTCCGA 4338 Query 213149 CACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGC 213208 |||| ||||| | | | ||||||||||| ||||| ||||||||||| || || Sbjct 4339 GGCGGGAGAGCCCTTGAAGGTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCAAGAGAGGC 4398 Query 213209 CTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGG 213268 ||||||||||| ||||||||| || || |||| | ||||||||| |||||| || Sbjct 4399 TGTCAGGGCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTCACGGGCCTCGGG 4458 Query 213269 GGACGTGAAGGGCATCATCATGCGTTGGAACA-CATCAGCCAGCCCCTGGACCCCGATGC 213327 ||| ||||||||| || | | ||| | | ||||| || ||||| || || | | Sbjct 4459 AGACTCGAAGGGCATGCGCA-GAGCAAGAAAAGCGTCAGCAAGACCCTGAACACCAACAC 4517 Query 213328 CGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGTTGCAG 213386 ||||||||| |||| || ||| ||| |||| |||||| | ||||||| |||| | Sbjct 4518 CGATGGGTCGATGTCGCATGTTGCTGTTGCGAGC-CTCCTCAATGGGGTAATGGTTGACG 4576 Query 213387 TCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGA 213446 || ||||||||||||||||| ||| | |||||| ||||| | | || | || | Sbjct 4577 TCAATGATCTTGTTGAGGTTACGGACGACCACTTGAGTGACCTCGTGGAGCTTCTGG--- 4633 Query 213447 TTGAACACGTAGCCCCCGTCCTGC------ACAAACTCAGGCAGGGCGATGCTGGCCAGG 213500 || |||||| || || | || || |||||||||| | ||||| | Sbjct 4634 ---AAGTCGTAGCGGCCTTCTTTGTAGTCGACGAAGGCAGGCAGGGCAAGAGAGGCCAAG 4690 Query 213501 TTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTG 213560 |||||||| || ||||| | || | | |||||| |||||||| |||||||||||| | Sbjct 4691 TTGCAAACAGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAGGTTGGAG 4750 Query 213561 CATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGC 213620 | || ||||| |||||||||| ||||| |||| |||| | ||||||||| ||| Sbjct 4751 CTGCGAATGGTTCCCAGGTTCTTCTGGTTGCTCTTTCTGTTGCAGGCATCCTTGTACAGC 4810 Query 213621 ATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCC 213680 || ||||| || || || ||||||| | || || | |||||| | | ||| Sbjct 4811 ATAAAGGGGTTGCCCGTTTCGGTCTGGGACTCGAGGATGGAGTACCAGAGCTTCTGGGC- 4869 Query 213681 TTGACCACCCGCCTGACAGCTCCGGGCGTAGC-CTCGTACTGTTCGTAGAGCTCGTTGAA 213739 || | | || | || ||| | | | ||| |||| ||||||||| | | || Sbjct 4870 ---ACGAATAGTCTTGCGGCCACGGCCCTCACGCTCATACTTTTCGTAGAGAGCCTCAAA 4926 Query 213740 TTCGTGGCCCCAG-ACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGT 213798 ||| | ||| || | | | |||| || || || ||||||||||||| |||| | Sbjct 4927 TTCCTCGCCATAGCAATCAG-CCAGGCCAGGGCACTCGTTGGGACACATGAGGGTCCAAT 4985 Query 213799 CCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGT 213858 |||||| | | ||| | || |||||| || || |||| |||||| || ||| |||| Sbjct 4986 CCCCGTTCTTTTCGACGCGCTTCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGGT 5045 Query 213859 CCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGT 213918 | | | | | || ||| || ||| || |||| ||| |||||||| || | || Sbjct 5046 CGCGAGCACGATTTTCTTCCTTACCGTGGTTCTTTCGCAAATCAAGAAAGTCGAACACGT 5105 Query 213919 CCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG---CCGCCCTGGT 213975 | |||||||| ||||| | |||||||||||| || || || | |||| |||||||||| Sbjct 5106 CTGCGTGCCAAGGCTCGAGGTAGATGGCAAATGCACCAGGTCGCTTGTTACCGCCCTGGT 5165 Query 213976 CCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGT- 214034 | || ||||| ||||||||| ||| || | ||| | | |||||||| ||| Sbjct 5166 CAACGTATCTGGCAGTGTTGTTGAAGACGCGAAGCATGGGAATGATGCCGTTGGA-TGTA 5224 Query 214035 CCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGA----GAGCCC 214090 |||||||| || || || || ||||||| || | || ||| |||| | || Sbjct 5225 CCGTTGGTGCCGGCAATGTAAGAGCCGGTAGCAC---GGATGC-GGTGGACGTTCAAGCC 5280 Query 214091 TATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGC 214150 || ||||| || ||||||||||||||| ||| | | | ||| || |||||| | Sbjct 5281 GATTCCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATGCCATC 5340 Query 214151 CATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCC 214210 |||||||| || | | || | | ||| ||| || ||||| | || | || Sbjct 5341 AATGCTGTCGTCCTTCATGTCGACTAGGAAACAGGAAGACAGCTGACACTGGGGGGTACC 5400 Query 214211 AGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGT 214270 || |||||| || || || ||| ||| | | | |||| | || | ||| |||||| Sbjct 5401 AGCGTTGAAGAGTGTAGGTGAGGCGTGGGTGAAGAGCTTGCTGGACATGAGGTGGTAGGT 5460 Query 214271 CTCCA 214275 ||||| Sbjct 5461 CTCCA 5465 >seq31 Length=45476 Score = 136 bits (150), Expect = 7e-27 Identities = 300/440 (68%), Gaps = 15/440 (3%) Strand=Plus/Minus Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899 || || || || |||| ||||| |||||||||||||| || |||| || ||||| ||| Sbjct 40084 TGATATTCTCCAACTCGCTTCTCGAAGAAGTTTGTCTTGCCACCCAAGGAAATGTTTTCC 40025 Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTT-CCAGCAG 47958 ||||| ||||||||||| || || || ||| | || ||| | ||| || Sbjct 40024 ATGAAATCGAAGGGGTTGGCGGTTTTGTATACCTTT-TCGTTACCAAGAGCAACCAATAG 39966 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG- 48017 | |||| ||||| | || || |||| ||| || ||| ||||||||||| ||| | Sbjct 39965 GCGATCGGCGACAAATTCAATATATTGCTTCATTAGTGTGGCGTTCATGCCTAGGAGAGC 39906 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 |||||| | ||||| || | |||||| | ||| || || || || | ||| | Sbjct 39905 ACACGGA-AGAGCCTCGGTCAAAAACTCTTGCTCAATGCCAACAGCGTCGGTGATAATAT 39847 Query 48078 GCT---TAACGCGGGACTCTGAGGGTTTGTTGCGC-AGGTGCTTGGCATAGAGCATGCAG 48133 || |||| | || || || | | ||| || ||| | | | || ||| Sbjct 39846 CCTGGATAACTTG---CT-TGCTGGCTCGGTGCTTGAGATGCGAG---TGCAACAGACAG 39794 Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 |||||||| ||||||| || || || ||| ||| || |||| |||||| |||||| Sbjct 39793 GCAAAGTCTGTGTGCAAACCCTCATCACGGGAGATAAGTTCGTTAGAGAAGGTGAGACCT 39734 Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253 ||||| | || | || |||||||||||||| | || || | || |||||||||| Sbjct 39733 GGCATCAGACCACGCTTCTTGAGCCAGAAAATCGAGGCAAAGGCACCGCTGAAGAAGATG 39674 Query 48254 CCCTCCACTGCCGCGAACGC 48273 |||||||| || ||||| || Sbjct 39673 CCCTCCACAGCAGCGAAAGC 39654 >seq31334 Length=230 Score = 104 bits (114), Expect = 4e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 213478 CAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCA 213537 |||||||||| | ||||| ||||||||| || ||||| | || | | |||||| | Sbjct 76 CAGGCAGGGCAAGAGAGGCCAAGTTGCAAACAGCAACCTCATCAGGGGCACAGTACTCGA 135 Query 213538 TGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTG 213597 ||||||| |||||||||||| || || ||||| |||||||||| ||||| |||| Sbjct 136 TGATCTCCGTGCACAGGTTGGAGCTGCGAATGGTTCCCAGGTTCTTCTGGTTGCTCTTTC 195 Query 213598 CGTTGGCAGAATCCTTGTAGAGCATGTAGGGG 213629 |||| | ||||||||| || || ||||| Sbjct 196 TGTTGCAGGCATCCTTGTACAGAATAAAGGGG 227 >seq29927 Length=230 Score = 91.5 bits (100), Expect = 3e-13 Identities = 130/180 (72%), Gaps = 5/180 (3%) Strand=Plus/Minus Query 213887 GTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGC 213946 ||| || |||| || |||||||| || | || |||||||| | ||| | ||||||||| Sbjct 226 GTTCTTTCGCAACTCCAGAAAGTCGAACACCTCTGCGTGCCAAGCCTCGAGGTAGATGGC 167 Query 213947 AAAGGCGCCCGGCCTCTTG---CCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGAT 214003 || || ||||| | |||| |||||||||| || |||||| ||||||||| Sbjct 166 AACTGCACCCGGTCGCTTGTTACCGCCCTGGTTAACGTATCTGGCCGTGTTGTTGAAGAC 107 Query 214004 GCGCAGGACGGGTACCAGCCCGTTGGACTGT-CCGTTGGTTCCCGCTATATACGAGCCGG 214062 ||| | | ||| | | |||||||| ||| ||||||||||| | || | ||||||| Sbjct 106 GCGAATCATGGGCAGGATGCCGTTGGA-TGTACCGTTGGTTCCGGAAATGTCAGAGCCGG 48 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931108218993920