Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq752 340 3e-88 seq31 114 2e-20 >seq752 Length=11106 Score = 340 bits (376), Expect = 3e-88 Identities = 863/1289 (67%), Gaps = 63/1289 (5%) Strand=Plus/Plus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGG-CCTCGGG 221475 |||||||||||||||||||||||||| |||||| ||||||||| ||| || ||||||| Sbjct 4400 GTCAGGGCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAG-CTCACGGGCCTCGGG 4458 Query 221476 AGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACC 221535 ||| ||||||||| ||||| |||| |||| || || ||||| || || | ||| Sbjct 4459 AGACTCGAAGGGCATGCGCAGAGCAAGAAAAGCGTCAGCAAGACCCTGAACACCAACACC 4518 Query 221536 GATGGGCCTGTGTCTCCTGTTG--GAAGCG-GCCGCTTCTGGCACGGGATAAAAGTTGAC 221592 |||||| | |||| | ||||| | ||| ||| | || | ||| ||| |||||| Sbjct 4519 GATGGGTCGATGTCGCATGTTGCTGTTGCGAGCCTCCTCA---ATGGGGTAATGGTTGAC 4575 Query 221593 GTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTG 221652 ||| || | ||||||||||| | || |||| | |||||| ||||||||| Sbjct 4576 GTCAATGATCTTGTTGAGGTTACGGACGACCACTTGAGTGACCTCGTGGAGCTTCTGGAA 4635 Query 221653 ATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCT 221712 | | | || ||| || | | | || || || || ||||||| Sbjct 4636 GTCGTA---------GCGGCCTTCTTTGTAG---TCGACGAAGGCAGGCAGGGCAAGAGA 4683 Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAG 221772 ||||| ||| || || || ||||| || | |||| |||||||| || || || Sbjct 4684 GGCCAAGTTGCAAACAGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAG 4743 Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTT 221832 |||| || ||||| ||||||| || || || ||| | ||| || ||||| Sbjct 4744 GTTGGAGCTGCGAATGGTTCCCAGGTTCTTCTGGTTGCTCTTTCTGTTGCAGGCATCCTT 4803 Query 221833 GTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTC 221892 ||| ||||||||||| ||| || || ||| | | | || || || |||||| | Sbjct 4804 GTACAGCATAAAGGGGTTGCCCGTTTCGGTCTGGGACTCGAGGATGGAGTACCAGAGCT- 4862 Query 221893 TCTGG-CGCTCACCGTCCTCTTG--ACTGCACCCTCGGTC----TTTTCATACCCGGTAT 221945 ||||| | | | ||| | | || || | | || || ||||| ||| Sbjct 4863 TCTGGGCACGAATAGTCTTGCGGCCACGGCCCTCACGCTCATACTTTTC-------GTAG 4915 Query 221946 AGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACA 222005 ||||| | |||| | || || || || ||||||| || ||| | |||||||| Sbjct 4916 AGAGCCT--CAAATTCCTCGCCATAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACA 4973 Query 222006 TCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCG 222065 | || |||| | | ||| | || ||| | || ||||||||| || ||||||||||| | Sbjct 4974 TGAGGGTCCAATCCCCGTTCTTTTCGACGCGCTTCATGAAGAGATCTGGGATCCACAGAG 5033 Query 222066 CCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAA 222125 | | ||||| || | | || | || ||| |||| ||| || | || ||| | || Sbjct 5034 CAAGGAAGAGGTCGCGAGCACGATTTTCTTCCTTACCGTGGTTCTTTCGCAAATCAAGAA 5093 Query 222126 ACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGT 222185 | || || | ||| |||||||| ||||| || |||| ||| | || || |||||||||| Sbjct 5094 AGTCGAACACGTCTGCGTGCCAAGGCTCGAGGTAGATGGCAAATGCACCAGGTCGCTTGT 5153 Query 222186 TGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGT 222244 | || ||||| || || || ||| | |||||||| |||||| | || | | Sbjct 5154 TACCGCCCTGGTCAACGTATCT-GGCAGTGTTGTTGAAGACGCGAAGCATGGGAATGATG 5212 Query 222245 CCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTAC--TGG 222302 ||||||||| |||||||||||| |||||| | ||| || | || | | ||| Sbjct 5213 CCGTTGGATGTACCGTTGGTGCCGGCAATGTAAGAGCCGGTAGCAC---GGATGCGGTGG 5269 Query 222303 -CAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCC 222361 | || |||||| ||||| || || ||||||||||| ||| ||||||||||||| Sbjct 5270 ACGTTCAAGCCGATTCCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCG 5329 Query 222362 ATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGAT 222421 |||||| || || ||| ||||| | || | || ||||| || |||| |||| | Sbjct 5330 TAGATGCCATCAATGCTGTCGTCCTTCATGTCGACTAGGAAACAGGAAGACAGCTGACAC 5389 Query 222422 TTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGC-CCCTAGACAT 222480 | || || || ||||| || || || || |||||| || ||| ||| || ||||| Sbjct 5390 TGGGGGGTACCAGCGTTGAAGAGTGTAGGTGAGGCGTGGGTGAAG-AGCTTGCTGGACAT 5448 Query 222481 CAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAAT-----CTGCATGGCG 222535 || | ||| ||||| | || | | || ||||| || ||| | ||| ||| Sbjct 5449 GAGGTGGTAGGTCTCCAAAACGCGCTCAATATTGTCTCCCCAAATACCGACCGCAACGCG 5508 Query 222536 CATCTCATGTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGT 222593 || | || ||||| |||||| | ||| ||| || | ||| | |||| || | Sbjct 5509 CA--TAAT---CATGTGCTGGGGTCGCTCGACAATCTTGCCGTTGAGTTTGAGA--AGAT 5561 Query 222594 ACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGA-GGTCAAAGTCTCTGCCGTGAACC 222652 | ||| | |||||||||||||| |||||||| |||| || ||||||||| ||| || Sbjct 5562 ATGATCTCTCCAGAGTCTTGAAGCCAAAGTA-TTGATAGTTGAAGTCTCTGTCGTAGACA 5620 Query 222653 ACGGCGGCGTCCAGCTCCGACTTGTGCTT 222681 | |||| ||| |||||| ||||| || Sbjct 5621 ATAGCGGAGTCAAGCTCCTCTTTGTGTTT 5649 >seq31 Length=45476 Score = 114 bits (126), Expect = 2e-20 Identities = 297/457 (65%), Gaps = 11/457 (2%) Strand=Plus/Plus Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929 |||| | |||| |||| || || |||||||||||||||||||| ||||||||| | ||| Sbjct 39636 TTTGCCCAGCGCTTGGTGGCTTTCGCTGCTGTGGAGGGCATCTTCTTCAGCGGTGCCTTT 39695 Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAG 25989 || | || |||||||||||| || || ||||| || || ||| || ||||| Sbjct 39696 GCCTCGATTTTCTGGCTCAAGAAGCGTGGTCTGATGCCAGGTCTCACCTTCTCTAACGAA 39755 Query 25990 CTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCAC 26049 || ||| | | || |||||| | |||| ||| |||||||| ||| | || || | | Sbjct 39756 CTTATCTCCCGTGATGAGGGTTTGCACACAGACTTTGCCTGTCTGTTGCACTCGCATCTC 39815 Query 26050 TTGCTCCACAAACCTTC--TCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGA 26107 || | | | || | |||| | || | ||| |||| || ||||| | | Sbjct 39816 AAGCAC--CGAGCCAGCAAGCAAGTTA---TCCAGGATATTATCACCGACGCTGTTGGCA 39870 Query 26108 TCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGAC 26167 | ||| | |||||| | ||||||||| || || Sbjct 39871 TTGAGCAAGAGTTTTTGACCGAGGCTCTTCCGTGTGCTCTCCTAGGCATGAACGCCACAC 39930 Query 26168 TCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTG--TGCCAGCTGGGACTCGC 26225 | |||| ||||| ||||| | ||| ||||| | || || ||| || || || Sbjct 39931 TAATGAAGCAATATATTGAATTTGTCGCCGATCGCCTATTGGTTGC--TCTTGGTAACGA 39988 Query 26226 CAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAA 26285 | | |||| || | ||||| ||||| || ||||||||||| || |||| || || Sbjct 39989 AAAGGTATACAAAACCGCCAACCCCTTCGATTTCATGGAAAACATTTCCTTGGGTGGCAA 40048 Query 26286 GACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCAA 26322 ||| |||||||| || ||| | || || || |||||| Sbjct 40049 GACAAACTTCTTCGAGAAGCGAGTTGGAGAATATCAA 40085 Score = 95.1 bits (104), Expect = 2e-14 Identities = 178/259 (69%), Gaps = 7/259 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | ||||||||||||||| || ||| |||||| ||||||||||| |||||| Sbjct 39183 ATCTGGCAAATGTACAAGAAGGCTGAAGCCTCTTTCTGGACGGCCGAAGAGATCGATCTG 39242 Query 25537 GCCAAGGACATGGACGGCTGG---TACGCTCTATCCAAAGACGAGCAGCATTT--TCTCA 25591 |||| ||| || ||| ||| || ||| | | |||||| | | || | ||| Sbjct 39243 TCCAAAGACTTGCACGATTGGAACAACCGTCTGAGCGACGACGAGAAATACTTCATTTCA 39302 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651 || | |||||||||||||| || ||||| || || || || || || || ||| Sbjct 39303 --CACATTTTGGCATTCTTTGCTGCTTCTGACGGCATTGTCAATGAAAACCTTCTTGAGC 39360 Query 25652 GATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCA 25711 | |||| | | || || ||| |||||| || ||||| || |||||||| | Sbjct 39361 GTTTCAGCGGCGAGGTTCAGGTTCCGGAGGCTCGTTGCTTCTATGGATTCCAGATCATGA 39420 Query 25712 TCGAAAATGTGCACTCTGA 25730 | || ||| | || ||||| Sbjct 39421 TGGAGAATATTCATTCTGA 39439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928421444150720