Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15]
36,463 sequences; 36,098,533 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq752 340 3e-88
seq31 114 2e-20
>seq752
Length=11106
Score = 340 bits (376), Expect = 3e-88
Identities = 863/1289 (67%), Gaps = 63/1289 (5%)
Strand=Plus/Plus
Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGG-CCTCGGG 221475
|||||||||||||||||||||||||| |||||| ||||||||| ||| || |||||||
Sbjct 4400 GTCAGGGCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAG-CTCACGGGCCTCGGG 4458
Query 221476 AGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACC 221535
||| ||||||||| ||||| |||| |||| || || ||||| || || | |||
Sbjct 4459 AGACTCGAAGGGCATGCGCAGAGCAAGAAAAGCGTCAGCAAGACCCTGAACACCAACACC 4518
Query 221536 GATGGGCCTGTGTCTCCTGTTG--GAAGCG-GCCGCTTCTGGCACGGGATAAAAGTTGAC 221592
|||||| | |||| | ||||| | ||| ||| | || | ||| ||| ||||||
Sbjct 4519 GATGGGTCGATGTCGCATGTTGCTGTTGCGAGCCTCCTCA---ATGGGGTAATGGTTGAC 4575
Query 221593 GTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTG 221652
||| || | ||||||||||| | || |||| | |||||| |||||||||
Sbjct 4576 GTCAATGATCTTGTTGAGGTTACGGACGACCACTTGAGTGACCTCGTGGAGCTTCTGGAA 4635
Query 221653 ATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCT 221712
| | | || ||| || | | | || || || || |||||||
Sbjct 4636 GTCGTA---------GCGGCCTTCTTTGTAG---TCGACGAAGGCAGGCAGGGCAAGAGA 4683
Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAG 221772
||||| ||| || || || ||||| || | |||| |||||||| || || ||
Sbjct 4684 GGCCAAGTTGCAAACAGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAG 4743
Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTT 221832
|||| || ||||| ||||||| || || || ||| | ||| || |||||
Sbjct 4744 GTTGGAGCTGCGAATGGTTCCCAGGTTCTTCTGGTTGCTCTTTCTGTTGCAGGCATCCTT 4803
Query 221833 GTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTC 221892
||| ||||||||||| ||| || || ||| | | | || || || |||||| |
Sbjct 4804 GTACAGCATAAAGGGGTTGCCCGTTTCGGTCTGGGACTCGAGGATGGAGTACCAGAGCT- 4862
Query 221893 TCTGG-CGCTCACCGTCCTCTTG--ACTGCACCCTCGGTC----TTTTCATACCCGGTAT 221945
||||| | | | ||| | | || || | | || || ||||| |||
Sbjct 4863 TCTGGGCACGAATAGTCTTGCGGCCACGGCCCTCACGCTCATACTTTTC-------GTAG 4915
Query 221946 AGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACA 222005
||||| | |||| | || || || || ||||||| || ||| | ||||||||
Sbjct 4916 AGAGCCT--CAAATTCCTCGCCATAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACA 4973
Query 222006 TCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCG 222065
| || |||| | | ||| | || ||| | || ||||||||| || ||||||||||| |
Sbjct 4974 TGAGGGTCCAATCCCCGTTCTTTTCGACGCGCTTCATGAAGAGATCTGGGATCCACAGAG 5033
Query 222066 CCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAA 222125
| | ||||| || | | || | || ||| |||| ||| || | || ||| | ||
Sbjct 5034 CAAGGAAGAGGTCGCGAGCACGATTTTCTTCCTTACCGTGGTTCTTTCGCAAATCAAGAA 5093
Query 222126 ACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGT 222185
| || || | ||| |||||||| ||||| || |||| ||| | || || ||||||||||
Sbjct 5094 AGTCGAACACGTCTGCGTGCCAAGGCTCGAGGTAGATGGCAAATGCACCAGGTCGCTTGT 5153
Query 222186 TGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGT 222244
| || ||||| || || || ||| | |||||||| |||||| | || | |
Sbjct 5154 TACCGCCCTGGTCAACGTATCT-GGCAGTGTTGTTGAAGACGCGAAGCATGGGAATGATG 5212
Query 222245 CCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTAC--TGG 222302
||||||||| |||||||||||| |||||| | ||| || | || | | |||
Sbjct 5213 CCGTTGGATGTACCGTTGGTGCCGGCAATGTAAGAGCCGGTAGCAC---GGATGCGGTGG 5269
Query 222303 -CAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCC 222361
| || |||||| ||||| || || ||||||||||| ||| |||||||||||||
Sbjct 5270 ACGTTCAAGCCGATTCCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCG 5329
Query 222362 ATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGAT 222421
|||||| || || ||| ||||| | || | || ||||| || |||| |||| |
Sbjct 5330 TAGATGCCATCAATGCTGTCGTCCTTCATGTCGACTAGGAAACAGGAAGACAGCTGACAC 5389
Query 222422 TTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGC-CCCTAGACAT 222480
| || || || ||||| || || || || |||||| || ||| ||| || |||||
Sbjct 5390 TGGGGGGTACCAGCGTTGAAGAGTGTAGGTGAGGCGTGGGTGAAG-AGCTTGCTGGACAT 5448
Query 222481 CAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAAT-----CTGCATGGCG 222535
|| | ||| ||||| | || | | || ||||| || ||| | ||| |||
Sbjct 5449 GAGGTGGTAGGTCTCCAAAACGCGCTCAATATTGTCTCCCCAAATACCGACCGCAACGCG 5508
Query 222536 CATCTCATGTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGT 222593
|| | || ||||| |||||| | ||| ||| || | ||| | |||| || |
Sbjct 5509 CA--TAAT---CATGTGCTGGGGTCGCTCGACAATCTTGCCGTTGAGTTTGAGA--AGAT 5561
Query 222594 ACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGA-GGTCAAAGTCTCTGCCGTGAACC 222652
| ||| | |||||||||||||| |||||||| |||| || ||||||||| ||| ||
Sbjct 5562 ATGATCTCTCCAGAGTCTTGAAGCCAAAGTA-TTGATAGTTGAAGTCTCTGTCGTAGACA 5620
Query 222653 ACGGCGGCGTCCAGCTCCGACTTGTGCTT 222681
| |||| ||| |||||| ||||| ||
Sbjct 5621 ATAGCGGAGTCAAGCTCCTCTTTGTGTTT 5649
>seq31
Length=45476
Score = 114 bits (126), Expect = 2e-20
Identities = 297/457 (65%), Gaps = 11/457 (2%)
Strand=Plus/Plus
Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929
|||| | |||| |||| || || |||||||||||||||||||| ||||||||| | |||
Sbjct 39636 TTTGCCCAGCGCTTGGTGGCTTTCGCTGCTGTGGAGGGCATCTTCTTCAGCGGTGCCTTT 39695
Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAG 25989
|| | || |||||||||||| || || ||||| || || ||| || |||||
Sbjct 39696 GCCTCGATTTTCTGGCTCAAGAAGCGTGGTCTGATGCCAGGTCTCACCTTCTCTAACGAA 39755
Query 25990 CTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCAC 26049
|| ||| | | || |||||| | |||| ||| |||||||| ||| | || || | |
Sbjct 39756 CTTATCTCCCGTGATGAGGGTTTGCACACAGACTTTGCCTGTCTGTTGCACTCGCATCTC 39815
Query 26050 TTGCTCCACAAACCTTC--TCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGA 26107
|| | | | || | |||| | || | ||| |||| || ||||| | |
Sbjct 39816 AAGCAC--CGAGCCAGCAAGCAAGTTA---TCCAGGATATTATCACCGACGCTGTTGGCA 39870
Query 26108 TCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGAC 26167
| ||| | |||||| | ||||||||| || ||
Sbjct 39871 TTGAGCAAGAGTTTTTGACCGAGGCTCTTCCGTGTGCTCTCCTAGGCATGAACGCCACAC 39930
Query 26168 TCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTG--TGCCAGCTGGGACTCGC 26225
| |||| ||||| ||||| | ||| ||||| | || || ||| || || ||
Sbjct 39931 TAATGAAGCAATATATTGAATTTGTCGCCGATCGCCTATTGGTTGC--TCTTGGTAACGA 39988
Query 26226 CAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAA 26285
| | |||| || | ||||| ||||| || ||||||||||| || |||| || ||
Sbjct 39989 AAAGGTATACAAAACCGCCAACCCCTTCGATTTCATGGAAAACATTTCCTTGGGTGGCAA 40048
Query 26286 GACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCAA 26322
||| |||||||| || ||| | || || || ||||||
Sbjct 40049 GACAAACTTCTTCGAGAAGCGAGTTGGAGAATATCAA 40085
Score = 95.1 bits (104), Expect = 2e-14
Identities = 178/259 (69%), Gaps = 7/259 (3%)
Strand=Plus/Plus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| ||| | ||||||||||||||| || ||| |||||| ||||||||||| ||||||
Sbjct 39183 ATCTGGCAAATGTACAAGAAGGCTGAAGCCTCTTTCTGGACGGCCGAAGAGATCGATCTG 39242
Query 25537 GCCAAGGACATGGACGGCTGG---TACGCTCTATCCAAAGACGAGCAGCATTT--TCTCA 25591
|||| ||| || ||| ||| || ||| | | |||||| | | || | |||
Sbjct 39243 TCCAAAGACTTGCACGATTGGAACAACCGTCTGAGCGACGACGAGAAATACTTCATTTCA 39302
Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651
|| | |||||||||||||| || ||||| || || || || || || || |||
Sbjct 39303 --CACATTTTGGCATTCTTTGCTGCTTCTGACGGCATTGTCAATGAAAACCTTCTTGAGC 39360
Query 25652 GATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCA 25711
| |||| | | || || ||| |||||| || ||||| || |||||||| |
Sbjct 39361 GTTTCAGCGGCGAGGTTCAGGTTCCGGAGGCTCGTTGCTTCTATGGATTCCAGATCATGA 39420
Query 25712 TCGAAAATGTGCACTCTGA 25730
| || ||| | || |||||
Sbjct 39421 TGGAGAATATTCATTCTGA 39439
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928421444150720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |