Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15]
36,463 sequences; 36,098,533 total letters
Query= NC_019545.1
Length=47355
Score E
Sequences producing significant alignments: (Bits) Value
seq26060 181 3e-41
>seq26060
Length=233
Score = 181 bits (200), Expect = 3e-41
Identities = 183/233 (79%), Gaps = 5/233 (2%)
Strand=Plus/Minus
Query 35536 AAAAGGCGAAAGCCGCGGTGCGCGAACACCAACGGCTTTCTGGTGCAAAAACGGTAGG-- 35593
||| ||||||||||| |||||||||| | || |||||||||||||| || | ||
Sbjct 231 AAATGGCGAAAGCCGGTCTGCGCGAACAGAACCGACTTTCTGGTGCAAAT-CGTTTGGAC 173
Query 35594 TAATTGC-GGAGATGAGTATGTCAAATACCGCTGAAATATACAAATTTCCTGCGCCGGTA 35652
| |||| |||| | ||||||||||| ||||| || || |||||| ||||||| | |
Sbjct 172 TCTTTGCAGGAG-TAAGTATGTCAAACACCGCCAAAGTAATCAAATTCCCTGCGCAGCAA 114
Query 35653 CCGACGCAACAGGAGTGCCGTATGGCTGATCTGGAAAATGGCTATTTACGTTTAGCTAAT 35712
||| |||| |||||| || ||||| |||||||||||||||||| | || | |||||
Sbjct 113 CCGGCGCAGCAGGAGAATCGCATGGCCGATCTGGAAAATGGCTATCTTCGCCTTGCTAAC 54
Query 35713 CAGATCCAGGACGCCTTGTGTATCGTTGAACTATCGGGGCGTGAGTTCCGTGT 35765
||||| ||||| ||| ||||| |||| || || ||||||||||||||||| ||
Sbjct 53 CAGATTCAGGATGCCCTGTGTTTCGTAGAGCTTTCGGGGCGTGAGTTCCGCGT 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 151348837848702
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |