Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_019545.1 Length=47355 Score E Sequences producing significant alignments: (Bits) Value seq26060 181 3e-41 >seq26060 Length=233 Score = 181 bits (200), Expect = 3e-41 Identities = 183/233 (79%), Gaps = 5/233 (2%) Strand=Plus/Minus Query 35536 AAAAGGCGAAAGCCGCGGTGCGCGAACACCAACGGCTTTCTGGTGCAAAAACGGTAGG-- 35593 ||| ||||||||||| |||||||||| | || |||||||||||||| || | || Sbjct 231 AAATGGCGAAAGCCGGTCTGCGCGAACAGAACCGACTTTCTGGTGCAAAT-CGTTTGGAC 173 Query 35594 TAATTGC-GGAGATGAGTATGTCAAATACCGCTGAAATATACAAATTTCCTGCGCCGGTA 35652 | |||| |||| | ||||||||||| ||||| || || |||||| ||||||| | | Sbjct 172 TCTTTGCAGGAG-TAAGTATGTCAAACACCGCCAAAGTAATCAAATTCCCTGCGCAGCAA 114 Query 35653 CCGACGCAACAGGAGTGCCGTATGGCTGATCTGGAAAATGGCTATTTACGTTTAGCTAAT 35712 ||| |||| |||||| || ||||| |||||||||||||||||| | || | ||||| Sbjct 113 CCGGCGCAGCAGGAGAATCGCATGGCCGATCTGGAAAATGGCTATCTTCGCCTTGCTAAC 54 Query 35713 CAGATCCAGGACGCCTTGTGTATCGTTGAACTATCGGGGCGTGAGTTCCGTGT 35765 ||||| ||||| ||| ||||| |||| || || ||||||||||||||||| || Sbjct 53 CAGATTCAGGATGCCCTGTGTTTCGTAGAGCTTTCGGGGCGTGAGTTCCGCGT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151348837848702