Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq23831 114 8e-20 seq326 114 8e-20 >seq23831 Length=243 Score = 114 bits (126), Expect = 8e-20 Identities = 105/133 (79%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 474732 CTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAG 474791 |||| ||||| ||||||||||||||||| ||||| || | ||||||||||| || |||| Sbjct 6 CTGAAGCAGTTATTACTGTTCCAGCATACTTTAACGACGCACAACGTCAAGCTACAAAAG 65 Query 474792 ATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCG 474851 | || || |||||||||| | || || | ||||| || ||||| || |||||||| | Sbjct 66 AAGCAGGTGAAATTGCAGGTTTAAAAGTAATGCGTATCATCAATGAGCCTACAGCAGCAG 125 Query 474852 CACTTGCTTATGG 474864 | | |||||||| Sbjct 126 CTTTAGCTTATGG 138 >seq326 Length=20000 Score = 114 bits (126), Expect = 8e-20 Identities = 161/221 (73%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCT-AGAG 480609 ||| ||||| || || ||||| | |||||||| || | || || || ||| || | Sbjct 12307 ACGCAGACGAAGCACGAGATGCAAAGTACTTTCCTTCTGGATGTTGTAGTC-GCTCAGCG 12365 Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669 | | | ||||| || |||||||| ||||||||||| ||||| || || ||||| |||| Sbjct 12366 TGCGGCCGTCTTCTAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCGGGAGGGATTC 12425 Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCA 480728 | ||||| || |||||||| |||||||| || || ||||||| | | | || || Sbjct 12426 CCTCCTTATCCTGAATCTTGGATTTGACAGTGTCGATGGTATCAGCAGATTCGACTTCCA 12485 Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | ||| ||||| || || || | ||||| || |||||||| Sbjct 12486 A-GGTGATAGTCTTTCCAGTCAAGGTCTTGACAAAAATTTG 12525 Score = 96.9 bits (106), Expect = 2e-14 Identities = 129/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || ||||| ||||| | || ||||| ||||||||||| || || ||||| || Sbjct 13107 TTGTAGTCAGCAAGAGTGCGACCGTCCTCAAGCTGCTTTCCAGCGAAGATCAGACGCTGC 13166 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || || || || ||||| ||||| || |||||||| |||||| ||||| |||||| Sbjct 13167 TGGTCGGGGGGGATTCCCTCCTTATCCTGAATCTTCGACTTGACATTGTCAATGGTATCA 13226 Query 480714 G-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | | || || ||||| || || |||||||| ||||| ||||| ||||| Sbjct 13227 GACGACTCGA-CCTCGAGAGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTG 13282 Score = 91.5 bits (100), Expect = 1e-12 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || ||||| || || | ||| || ||| || || || || || || || | |||| Sbjct 12536 CGCAGACGCAGGACCAAATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCCAAAGTT 12595 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | ||| || || ||||| |||||||| || || || || || ||||| ||||| ||| Sbjct 12596 CGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGAATGCCT 12655 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAG 480730 ||||||||||||||||| || ||| || || ||||| | | | | || ||| Sbjct 12656 TCCTTGTCTTGAATCTTAGCCTTTACATTATCGATTGTATCCGAAGATTCGACTTCCAA- 12714 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || ||||| || || || | |||||| ||||| || || Sbjct 12715 TGTGATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTG 12753 Score = 91.5 bits (100), Expect = 1e-12 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| || ||||||||||| ||||| || ||| || | ||| || || || || || Sbjct 12763 ACGGAGGCGGAGTACAAGGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGCGAGGGT 12822 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | |||||| || ||||| ||||| || || | || || |||||||||||||| || Sbjct 12823 ACGACCATCTTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGATCAGGAGGAATACC 12882 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACA 480698 |||||| || |||||||| ||||||| Sbjct 12883 TTCCTTATCCTGAATCTTCGATTTGACA 12910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3266615125011524