Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_020416.1 Length=160221 Score E Sequences producing significant alignments: (Bits) Value seq20645 113 5e-20 >seq20645 Length=266 Score = 113 bits (124), Expect = 5e-20 Identities = 143/194 (74%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 134035 ACCGGCGTTGATGCCGATACCAGCTCGCTTGCTGATATACTTAATAATAC-TGTTACTTG 134093 |||||||||||| ||||||||||| || | ||| | || || | ||| || | || | Sbjct 34 ACCGGCGTTGATACCGATACCAGCGCGTTGGCTCACGTATTTTACGATAGATGATGCT-G 92 Query 134094 CCGCATTAATAGAATTCAGTGAATCGCCAGCTTCAATAACTACACAAGAACTAAACTGAC 134153 ||| || || |||| || ||||||| |||||| | ||| || || |||||||||| Sbjct 93 TCGCGTTGATGGAATCCAAGCTATCGCCACATTCAATCAGTACGCATGAGCTAAACTGAC 152 Query 134154 GAGTAGGAGTACGAGCCCCTGCCATAATCGGTGTAGGCAATGAAATCTGGCGAGTAGATA 134213 |||| || ||||| | || ||||| || || || |||| |||||||| ||| |||| Sbjct 153 GAGTCGGCGTACGCACTCCCGCCATGATAGGCGTTGGCAGTGAAATCTTAAAAGTCGATA 212 Query 134214 CAGCATCATAAAAA 134227 | || || |||||| Sbjct 213 CCGCGTCGTAAAAA 226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 512345572807880