Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq752 269 3e-67 seq31334 84.2 3e-11 >seq752 Length=11106 Score = 269 bits (298), Expect = 3e-67 Identities = 1157/1801 (64%), Gaps = 37/1801 (2%) Strand=Plus/Minus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGCATCCTCAT 75204 |||||||| |||| || || |||| || | ||||||| ||| | |||| | | Sbjct 5592 TACTTTGGCTTCAAGACTCTGGAGA-GATCATATCTTCTCAAACTCAACGGCAAGATTGT 5534 Query 75205 GGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGA 75264 || || ||| ||||| | ||||| || || |||| || || || | ||||| Sbjct 5533 CGAGCGACCCCAGCACATGATTATGCGCGTTGCGGTCGGTATTTGGGGAGACAATATTGA 5474 Query 75265 TTCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCA 75322 || |||||||| ||| || |||||| |||| | | ||| ||||| |||| Sbjct 5473 GCGCGTTTTGGAGACCTACCACCTCATGTCCAGCAAGCTCT--TCACCCACGCCTCACCT 5416 Query 75323 ACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAAC 75382 || |||||||| |||||||| || ||| |||| || ||||| ||| || Sbjct 5415 ACACTCTTCAACGCTGGTACCCCCCAGTGTCAGCTGTCTTCCTGTTTCCTAGTCGACATG 5356 Query 75383 AAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAG 75442 ||||| ||| || | || ||||| | ||||| | | ||||| ||||| ||| Sbjct 5355 AAGGACGACAGCATTGATGGCATCTACGACACTCTCAAGACCTGTGCCATGATCTCCAAG 5296 Query 75443 TGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGG 75502 |||||| || || || || || |||| | | || | ||| ||| Sbjct 5295 ATGGCTGGTGGAATCGGCTTGAACGTCCACCGCATCCGTGCTACCGGCTCTTACATTGCC 5236 Query 75503 GGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 75562 || || || ||| ||| | || || ||||| ||||||||||| || ||| ||| || Sbjct 5235 GGCACCAACGGTACATCCAACGGCATCATTCCCATGCTTCGCGTCTTCAACAACACTGCC 5176 Query 75563 CGCTATGTAAATCAAGCGGGGCGTCGCAAGGG-----GTCCATC-GCGGTCTACTTGGAA 75616 | || || | || ||| || |||| | || ||| || ||||| | || Sbjct 5175 AGATACGTTGACCA---GGGCGGTAACAAGCGACCTGGTGCATTTGCCATCTACCTCGAG 5119 Query 75617 CCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAG 75676 || ||||| || || | | || || ||||| || ||| ||||| ||| | ||||| Sbjct 5118 CCTTGGCACGCAGACGTGTTCGACTTTCTTGATTTGCGAAAGAACCACGGTAAGGAAGAA 5059 Query 75677 GCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTT 75736 ||| | | || ||||| | |||||||| ||||| || ||||||||||| || Sbjct 5058 AATCGTGCTCGCGACCTCTTCCTTGCTCTGTGGATCCCAGATCTCTTCATGAAGCGCGTC 4999 Query 75737 GAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC-GC 75795 || || || | ||| | || | ||||| || || || || || | || || Sbjct 4998 GAAAAGAACGGGGATTGGACCCTCATGTGTCCCAACGAGTGCCCTGGCCTGGCTGATTGC 4939 Query 75796 GGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGC 75855 ||| ||||| ||||| || |||||| ||||||||| ||||| | | | Sbjct 4938 TATGGC-GAGGAATTTGAGGCTCTCTACGAAAAGTATGAGCGTGAGGGCCGTGGCCGCAA 4880 Query 75856 GACTGTACCAGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAA 75914 |||| | | ||| | || | | ||| | | || ||| | || ||||| || || || | Sbjct 4879 GACTATTCGTGCC-CAGAAGCTCTGGTACTCCATCCTCGAGTCCCAGACCGAAACGGGCA 4821 Query 75915 CACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAA 75974 || | |||||| ||||||||||| || |||| ||||| ||||| ||||| |||||| Sbjct 4820 ACCCCTTTATGCTGTACAAGGATGCCTGCAACAGAAAGAGCAACCAGAAGAACCTGGGAA 4761 Query 75975 CAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGG 76034 | || ||||| || || |||||||| || | |||||| | |||||| | Sbjct 4760 CCATTCGCAGCTCCAACCTGTGCACGGAGATCATTGAGTACTGTGCCCCTGATGAGGTTG 4701 Query 76035 CTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGA-AGAGACTCGCACT 76093 |||||||||| ||||| || | ||||| || | ||| | | | ||| | || Sbjct 4700 CTGTTTGCAACTTGGCCTCTCTTGCCCTGCCTGCCTTCGTCGACTACAAAGAAGGCCGCT 4641 Query 76094 TTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTC 76153 || | | || || || || |||| | | || | || || ||| || Sbjct 4640 AC-GACTTCCAGAAGCTCCACGAGGTCACTCAAGTGGTCGTCCGTAACCTCAACAAGATC 4582 Query 76154 ATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCT 76213 |||||| || ||| ||| ||||| || || || || |||||||| |||| Sbjct 4581 ATTGACGTCAACCATTACCCCATTGAGGAGGCTCGCAACAGCAACATGCGACATCGACCC 4522 Query 76214 ATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTT-TGTGCCGCTACGCATTTGA 76272 || ||| | |||||||| ||||| || || | ||| || | ||| | | | || || Sbjct 4521 ATCGGTGTTGGTGTTCAGGGTCTTGCTGACGCTTTTCTTGCTCTGCGCATGCCC-TTCGA 4463 Query 76273 TTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCT 76332 || || ||| ||| | || | ||||| || ||||| || ||||| |||| Sbjct 4462 GTCTCCCGAGGCCCGTGAGCTCAACAAGCAGATCTTCGAGACCATCTACCACGCTGCCCT 4403 Query 76333 GGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCC 76392 | || | ||| |||| ||| ||||| |||| || || |||| ||||| Sbjct 4402 GACAGCCTCTCTTGAGCTGGCCAAAGAGCAAGGCCCCTACTCTACCTTCAAGGGCTCTCC 4343 Query 76393 CGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAACTACG- 76451 ||| || |||| | ||||| || || |||||| || || || || || | || | Sbjct 4342 CGCCTCGGAAGGTATTCTTCAATTCGACATGTGG-AATGTCAAGCCTT-CTGAGTTATGG 4285 Query 76452 -ACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTT--TGA 76508 | ||||| ||| ||||| | ||||||||| | ||| |||| ||| || || || Sbjct 4284 GAGTGGGACAGTCTGAAGGAGCAGATCAAGGAGCACGGTATTCGCAAC--TCGTTGCTGC 4227 Query 76509 TGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAAC 76568 | || || ||||| || || || ||| | ||||| ||||||| ||||| |||||||| | Sbjct 4226 TCGCTCCCATGCCCACCGCATCGACCTCGCAAATTCTGGGTAACAATGAGTGCTTTGAGC 4167 Query 76569 CATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACA 76628 ||||||| | ||||| |||| | | | | | || ||||| || | |||||| Sbjct 4166 CATACACGTCCAACATTTACCAGCGCCGTGTCTTGGCTGGTGAATTCCAGGTCGTCAACC 4107 Query 76629 AGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCA 76688 ||| |||| || ||| | || ||||||||||| | | |||||| | | || Sbjct 4106 CCTGGCTCCTCAAGGATCTCGTCGACATGGGTCTCTGGTCTGATGCCATGAAGAACCGCA 4047 Query 76689 TGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAGAATC 76748 | | | | |||||||||||| || ||| | ||||||| | || |||||| || Sbjct 4046 TCATTGCCGAGAATGGTTCCATTCAGAACATCCCCAATATCCCCGCCGACATCAAGGCTC 3987 Query 76749 TCTACCGCACAGTGTGGGAAATCAAGATGAAAGATGTCATTGACATGGCCGCAGATCGTG 76808 |||| || || ||||| || | |||| || | |||||||| ||||| | Sbjct 3986 TCTATAAGACTGTTTGGGAGATTTCTCAGCGTCATGTTATCCAGATGGCCGCCGATCGCG 3927 Query 76809 GTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAGTCCAACGATGTC 76866 || ||| || || | |||| ||| | || | |||| | ||| || ||| Sbjct 3926 GTGCCTTTATCGACC--AGTCCCAGTCGCTCAACGTTCACATGAAGGATCCTACTATGGG 3869 Query 76867 CAAGCTCTCTTCTATGCA-TATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTACT 76925 |||| || | |||||||| | || || ||||| ||| ||||| || || ||||||| Sbjct 3868 CAAGATCACCTCTATGCACTTTGCTGGC-TGGAAGTTGGGTCTCAAGACGGGCATGTACT 3810 Query 76926 A 76926 | Sbjct 3809 A 3809 >seq31334 Length=230 Score = 84.2 bits (92), Expect = 3e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 75922 TATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAA 75981 ||| || ||||||||||| || |||| ||||| ||||| ||||| ||||||| || Sbjct 221 TATTCTGTACAAGGATGCCTGCAACAGAAAGAGCAACCAGAAGAACCTGGGAACCATTCG 162 Query 75982 GAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTG 76041 ||||| || || |||||||| || | |||||| | |||||| |||||||| Sbjct 161 CAGCTCCAACCTGTGCACGGAGATCATCGAGTACTGTGCCCCTGATGAGGTTGCTGTTTG 102 Query 76042 CAATTTGGCATCAATCGCCCTTCC 76065 ||| ||||| || | ||||| || Sbjct 101 CAACTTGGCCTCTCTTGCCCTGCC 78 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596297691033440