Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15]
36,463 sequences; 36,098,533 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq326 96.9 6e-15
>seq326
Length=20000
Score = 96.9 bits (106), Expect = 6e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192
|||||| | || ||||| || |||||||| ||| || || || || ||||||
Sbjct 12301 ACCACCACGCAGACGAAGCACGAGATGCAAAGTACTTTCCTTCTGGATGTTGTAGTCGCT 12360
Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252
| ||| | || |||| || |||||||||||||| | || || || || |||||
Sbjct 12361 CAGCGTGCGGCCGTCTTCTAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCGGGAGG 12420
Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312
||||| || ||||| || || |||| ||| | | | || ||||| | ||| || ||
Sbjct 12421 GATTCCCTCCTTATCCTGAATCTTGGATTTGACAGTGTCGATGGTATCAGCAGATTCGAC 12480
Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
||| | || ||||| || || || | || || ||||| ||||||||
Sbjct 12481 TTCCAAGGTGATAGTCTTTCCAGTCAAGGTCTTGACAAAAATTTGCAT 12528
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 899244348770160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |