Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq326 96.9 6e-15 >seq326 Length=20000 Score = 96.9 bits (106), Expect = 6e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | || ||||| || |||||||| ||| || || || || |||||| Sbjct 12301 ACCACCACGCAGACGAAGCACGAGATGCAAAGTACTTTCCTTCTGGATGTTGTAGTCGCT 12360 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 | ||| | || |||| || |||||||||||||| | || || || || ||||| Sbjct 12361 CAGCGTGCGGCCGTCTTCTAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCGGGAGG 12420 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 ||||| || ||||| || || |||| ||| | | | || ||||| | ||| || || Sbjct 12421 GATTCCCTCCTTATCCTGAATCTTGGATTTGACAGTGTCGATGGTATCAGCAGATTCGAC 12480 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| | || ||||| || || || | || || ||||| |||||||| Sbjct 12481 TTCCAAGGTGATAGTCTTTCCAGTCAAGGTCTTGACAAAAATTTGCAT 12528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899244348770160