Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq326 122 2e-22 >seq326 Length=20000 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | || ||||| | ||||| ||| || ||| || || || Sbjct 12527 ATACCACCCCGCAGACGCAGGACCAAATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCG 12586 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | |||| ||| | || || | || ||||||||||| || | || ||| |||||||| Sbjct 12587 GCCAAAGTTCGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGG 12646 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || ||| ||||||||| || ||||| || ||||| Sbjct 12647 GGAATGCCTTCCTTGTCTTGAATCTTAGCCTTTACATTATCGATTGTATCCGAAGATTCG 12706 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | || || || || ||||| || || || | ||| |||||||| Sbjct 12707 ACTTCCAATGTGATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 12756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904723450325400