Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq31 123 7e-23 seq320 100 8e-16 seq184 84.2 6e-11 >seq31 Length=45476 Score = 123 bits (136), Expect = 7e-23 Identities = 328/499 (66%), Gaps = 8/499 (2%) Strand=Plus/Plus Query 133439 CCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGT 133498 ||||| || ||| ||| | |||||||| ||| ||||| ||||||||| | | || Sbjct 39576 CCTTGCATCCGAAAAAAAGCAGACTGGGCCATTCGTTGGATTCAGGACAAGGATTCCAGC 39635 Query 133499 TTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTC 133558 ||||| || | || ||||| |||| || |||||||| || ||||| ||||| || Sbjct 39636 TTTGCCCAGCGCTTGGTGGCTTTCGCTGCTGTGGAGGGCATCTTCTTCAGCGGTGCCTTT 39695 Query 133559 TGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAA 133618 ||| ||||| ||||| || ||||||||| | | || || || || ||||||||| Sbjct 39696 GCCTCGATTTTCTGGCTCAAGAAGCGTGGTCTGATGCCAGGTCTCACCTTCTCTAACGAA 39755 Query 133619 CTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCCGTTTTACTTCACTCTAAATTA 133678 ||||| || | || |||| | ||||| || |||||| | | | ||||| | | Sbjct 39756 CTTATCTCCCGTGATGAGGGTTTGCACACAGACTTTGCCTGTCTGTTGCACTCGCATCTC 39815 Query 133679 GAGCGACCACTCAAAAAGAATAAGATTGAAGAAATTATTAGAGAAGCGGTTGAAATTGAG 133738 ||| | | || ||| | || | || ||||| | || || |||| |||||| Sbjct 39816 AAGCACCGAGCCAGCAAGCAAGTTATCCAGGATATTATCACCGACGCTGTTGGCATTGAG 39875 Query 133739 GTTGAATTTATCAATAGTGCTCTGCCGTGCCGTTTAATTGGTATGAATGATGTGCTGATG 133798 || ||| | | ||||| ||||| | | | || ||||| | || ||| Sbjct 39876 CAAGAGTTTTTGACCGAGGCTCTTCCGTGTGCTCTCCTAGGCATGAACGCCACACTAATG 39935 Query 133799 CAGCGTTATATTGAATTTGTAGCTGA---CAGATTGGCCGTTCAGTTAGGTGGGGATAAG 133855 ||| |||||||||||||| || || | ||||| | || | ||| || ||| Sbjct 39936 AAGCAATATATTGAATTTGTCGCCGATCGCCTATTGGTTGCTC---TTGGTAACGAAAAG 39992 Query 133856 ATTTACGGTTCCGCCAATCCATTCGACTGGATGGAGAGCATTAGCATTGAATCAAAGACT 133915 | ||| ||||||| || ||||| | ||||| | |||| | | | ||||| Sbjct 39993 GTATACAAAACCGCCAACCCCTTCGATTTCATGGAAAACATTTCCTTGGGTGGCAAGACA 40052 Query 133916 AATTTCTTCGAG--GCGAG 133932 || ||||||||| ||||| Sbjct 40053 AACTTCTTCGAGAAGCGAG 40071 >seq320 Length=20187 Score = 100 bits (110), Expect = 8e-16 Identities = 219/324 (68%), Gaps = 8/324 (2%) Strand=Plus/Minus Query 302497 CCGTCATCGCCGTAGGAATACTGAATGATTTTGTTCTTGTTA-TTTCTTACGGTCATATC 302555 || || ||||| || | |||||||||| | | || | | |||| || ||| ||| Sbjct 17223 CCATCTTCGCCATACAAGAACTGAATGATATC-TCCTAATGAGTTTCGCACAGTCCCATC 17165 Query 302556 ATAAC---CAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGT 302612 ||||| || ||| | ||||| | | ||||| | || |||||||| || ||||| Sbjct 17164 ATAACGTGCACTCAAA---TCTTCAAGAGCCTTGACCAGTCGTCGCTGAATGTATCCAGT 17108 Query 302613 TGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672 | | || || ||||| || || || ||||| | || ||| |||| || |||||||| Sbjct 17107 TTCGGCAGTCTTGACAGCAGTGTCGATAAGACCTTCTCGTCCAGCCATGGCGTGGAAGAA 17048 Query 302673 TAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG 302732 | ||| || || || | | | ||||| | || |||||||||||||| ||||| Sbjct 17047 AAACTCGGTAGGAGTGAGGCCACGGAGATAGGAGTTTTCGACGAAACCACGCGCTTCGGG 16988 Query 302733 CGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACG 302792 || | |||| ||| ||||| || |||| || | || | |||| | || ||||| Sbjct 16987 GGAGTAGTCGTCCTTTGTAAAATGCGGCAATGTTCGGTATTTGAAGCCAAACGGAATACG 16928 Query 302793 CTTTCCATCAACGTTCTGCTGTCC 302816 || || || || ||||||| || Sbjct 16927 TTTACCTTCCACAATCTGCTGACC 16904 >seq184 Length=26130 Score = 84.2 bits (92), Expect = 6e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 || || || ||||| || |||||| || || || |||||||||||||| || | | Sbjct 24413 TGAGCAATCGTCATTCGCGAGGGAATGGCGTGTGGGTTGATGATGATGTCTGGCGTGACA 24354 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-TGTTTCCAATAGTTCCCTTTTG 251957 || || ||| || ||||| |||| || || ||| || |||||||| |||||||| Sbjct 24353 CCTTCCCTAGTAAACGGCATGTCCTCTTG-TCGGTAAGTGACACCAATAGTGCCCTTTTG 24295 Query 251958 TCCGTGACGAGAACTGAACTTATCACCAAT 251987 ||||||||||| |||||| || ||||| Sbjct 24294 CCCGTGACGAGAGGCGAACTTGTCTCCAAT 24265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471129993034031