Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq752 150 2e-30 seq31442 136 5e-26 seq435 136 5e-26 seq119 105 8e-17 seq26472 89.7 6e-12 seq31 89.7 6e-12 seq320 86.0 8e-11 >seq752 Length=11106 Score = 150 bits (166), Expect = 2e-30 Identities = 270/393 (69%), Gaps = 15/393 (4%) Strand=Plus/Plus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 || |||||| ||||| | || |||| ||| |||||||| |||||||| | || |||||| Sbjct 5158 GCCCTGGTCAACGTATCTGGCAGTGTTGTTGAAGACGCGAAGCATGGGAATGATGCCGTT 5217 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAA 1630181 ||| ||||||||||| || | ||| | ||||| || || | ||| || || Sbjct 5218 GGATGTACCGTTGGTGCCGGCAATGTAAGAGCCGGTAGCACGGATGCGGTGGACGTTCAA 5277 Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 |||||| || || ||| ||||||||| | || || ||||| |||||||||||||| Sbjct 5278 GCCGATTCCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATGCC 5337 Query 1630242 CTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGT 1630301 || || |||| |||||||||| || || || || || || || || | || Sbjct 5338 ATCAATGCTGTCGTCCTTCATGTCGACTAGGAAACAGGAAGACAGCTGACACTGGGGGGT 5397 Query 1630302 GCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTA 1630361 || ||||||||||| || || | || |||||| | || | |||||| || ||| Sbjct 5398 ACCAGCGTTGAAGAGTGTAGGTGAGGCGTGGGTGAAGAGCTTGCTGGACATGAGGTGGTA 5457 Query 1630362 GGTGGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGC 1630421 ||| | | |||||| | | || ||| || ||| ||| |||| || Sbjct 5458 GGTCTCCAAAACGCGCTCAA---TATTGTC----TCCCCAA----ATA----CCGACCGC 5502 Query 1630422 GACGCGCATGAGCATGTACTGGGGCCGCTCGAC 1630454 |||||||| | ||||| |||||| |||||||| Sbjct 5503 AACGCGCATAATCATGTGCTGGGGTCGCTCGAC 5535 Score = 100 bits (110), Expect = 3e-15 Identities = 283/437 (65%), Gaps = 10/437 (2%) Strand=Plus/Plus Query 1628169 GATCTCGGTGCACAGGTTGGC-CGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTCA 1628227 |||||| ||||||||||||| | || | || |||||||||| ||||||| | | Sbjct 4729 GATCTCCGTGCACAGGTTGGAGCTGCGAA-TGGTTCCCAGGTTCTTCTGGTTGCTCTTTC 4787 Query 1628228 GGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACGA 1628287 |||| ||| ||||||| ||||| |||| ||| || ||| |||| | | ||| || Sbjct 4788 TGTTGCAGGCATCCTTGTACAGCATAAAGGGGTTGCCCGTTTCGGTCTGGGACTCGAGGA 4847 Query 1628288 TGGCCGACCAGATCTGGCGCGCGGGCACGAC-AGTCC-GCG--CGCGGCCCTNNNNNNNN 1628343 ||| |||||| || | ||||||| |||| ||| | ||||||| Sbjct 4848 TGGAGTACCAGAGCTTCTG----GGCACGAATAGTCTTGCGGCCACGGCCCTCACGCTCA 4903 Query 1628344 NNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCGCCTCG 1628403 ||||| || |||| ||||| || |||||| || |||| Sbjct 4904 TACTTTTCGTAGAGAGCCTCAAATTCCTCGCCATAGCAATCAGCCAGGCCAGGGCACTCG 4963 Query 1628404 GACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAGGTCACAC 1628463 ||||| | ||| | ||| || || | | |||| ||| ||||| || Sbjct 4964 TTGGGACACATGAGGGTCCAATCCCCGTTCTTTTCGACGCGCTTCATGAAGAGATCTGGG 5023 Query 1628464 GTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTG 1628523 ||||||| || ||||||||||| || || || || ||||| |||||||||||| Sbjct 5024 ATCCACAGAGCAAGGAAGAGGTCGCGAGCACGATTTTCTTCCTTACCGTGGTTCTTTCGC 5083 Query 1628524 AGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCC 1628583 | || || |||||| | ||| |||||||| ||||| |||||| |||||| || || Sbjct 5084 AAATCAAGAAAGTCGAACACGTCTGCGTGCCAAGGCTCGAGGTAGATGGCAAATGCACCA 5143 Query 1628584 TTGCGCTTGCCGCCGCC 1628600 |||||| ||||| Sbjct 5144 GGTCGCTTGTTACCGCC 5160 >seq31442 Length=230 Score = 136 bits (150), Expect = 5e-26 Identities = 93/105 (89%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 |||||||||||||||||||||| || || ||| |||| |||||| | ||||||||||||| Sbjct 45 CCAACTACCTCGACATCAAGCCCCTACTTGATGTTGGCTGCAAGACGGTGGCCAACATGA 104 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||||| ||||| || ||||||||||| || ||||||| Sbjct 105 TCAAGGGCAAGTCACCCGAAGAAATCCGCAAGACTTTCAACATCA 149 >seq435 Length=16778 Score = 136 bits (150), Expect = 5e-26 Identities = 93/105 (89%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 |||||||||||||||||||||| || || ||| |||| |||||| | ||||||||||||| Sbjct 3187 CCAACTACCTCGACATCAAGCCCCTACTTGATGTTGGCTGCAAGACGGTGGCCAACATGA 3128 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||||| ||||| || ||||||||||| || ||||||| Sbjct 3127 TCAAGGGCAAGTCACCCGAAGAAATCCGCAAGACTTTCAACATCA 3083 >seq119 Length=31386 Score = 105 bits (116), Expect = 8e-17 Identities = 253/378 (67%), Gaps = 10/378 (3%) Strand=Plus/Minus Query 18120 CGTCGGCTGCATCATCGACGGCGTGCCGCCGTG-CATGCCACTGGCCGAGGCCGACATCC 18178 |||| ||||||||||||| | || || | | |||| || | ||| | ||||||| Sbjct 25434 CGTCTCCTGCATCATCGACAACTGCCCTCCAGGTCTTGCC-CTCGTCGAAGATGACATCC 25376 Query 18179 AGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTTTCCACGCCGCGCAACGAGC 18238 |||| || | | || ||||| ||||||||| || | | || || |||||||| Sbjct 25375 AGCCGCAACTCAACCGCCGCCGGCCGGGCCAGTCGGCCATAACGACACCCCGCAACGAAA 25316 Query 18239 CCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTCG 18298 ||| |||| |||||| || ||||| ||| |||| || || ||| ||||| | Sbjct 25315 AAGATAAGGTCACCATCCACTCTGGCACCGAGTTCGGCAAGACCCTAGGCACGCCCATTT 25256 Query 18299 GCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTATTCCGACATGTGCAAGG--- 18355 ||| || ||||| ||||| |||||| ||||| ||||| | | | Sbjct 25255 TGCTCACGGTCCCCAACGAAGACCAACGGCCCAAGGACTACGGCGACAAGACGATCGATC 25196 Query 18356 --TGCCGCGGCCCTCA--CACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCG 18411 | || | |||| || |||||||||| || || | | |||||||||| ||||| Sbjct 25195 TCTACCCCCGCCC-CAGCCACGCCGACTGGACATATCTCGAAAAGTACGGCACAAAGGCC 25137 Query 18412 TCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCG 18471 || ||||| ||| || ||||||||||| || ||||| || |||||||| Sbjct 25136 AGCTCCGGCGGCGGCAGGAGCAGCGCCCGCGAGACAATCGCCCGCGTGGCTGCCGGCGCC 25077 Query 18472 GTCGCCGAGAAATGGCTC 18489 |||||||| || |||||| Sbjct 25076 GTCGCCGATAAGTGGCTC 25059 Score = 98.7 bits (108), Expect = 1e-14 Identities = 113/148 (76%), Gaps = 3/148 (2%) Strand=Plus/Minus Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106 ||||||| ||||||||| ||||| ||||| ||||||| || | || ||||||||| Sbjct 24839 GACAGCACCGGCGGCACCGTGACCTGCGTTATCCGCAACGCCCCCTCTGGTCTCGGCGAG 24780 Query 19107 CCGTGCTTT-GACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCAC 19165 || ||| || || ||| |||| ||| ||| ||||||||||| || ||||| ||| Sbjct 24779 CC-TGCGTTCGATAAGCTCGAAGCCCTCATCGGGCACGCCATGCTCTCCATCCCCGCCGT 24721 Query 19166 CAAGGGATTCGAGATTGGCAGCGGGTTT 19193 |||||| ||||| || ||| ||||||| Sbjct 24720 CAAGGGCTTCGAAATCGGC-TCGGGTTT 24694 >seq26472 Length=231 Score = 89.7 bits (98), Expect = 6e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 18070 TTCGGCAAGGTATTTAGGGTCACCACCTTTGGCGAGTCGCACGGGGCGGGCGTCGGCTGC 18129 ||||||||| | || || ||||| |||||||||||||| || ||| | ||||||| Sbjct 148 TTCGGCAAGCTGTTCTCCGTAACCACTTTTGGCGAGTCGCATGGCCCGGCCATCGGCTGT 89 Query 18130 ATCATCGACGGCGTGCCGCCGTGCATGCCACTGGCCGAGGCCGACATCCAGCCTCAGTTG 18189 |||| |||||| ||||| ||||| | || |||| |||| ||||||||| || || Sbjct 88 GTCATTGACGGCTGCCCGCCCGGCATGGCGCTTTCCGAAGCCGGCATCCAGCCCGAGCTG 29 Query 18190 GATCGGCGC 18198 || || ||| Sbjct 28 GACCGCCGC 20 >seq31 Length=45476 Score = 89.7 bits (98), Expect = 6e-12 Identities = 165/241 (68%), Gaps = 1/241 (0%) Strand=Plus/Minus Query 868700 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 868759 || || || || ||| |||||| ||||| |||||||| | | || || ||||| Sbjct 40081 TATTCTCCAACTCGCTTCTCGAAGAAGTTTGTCTTGCCACCCAAGGAAATGTTTTCCATG 40022 Query 868760 CACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGG 868819 | ||| ||||||| || ||||| ||||||| || || | | | ||||| Sbjct 40021 AAATCGAAGGGGTTGGCGGTTTTGTATACCTTTTCGTTACCAAGAGCAACCAATAGGCGA 39962 Query 868820 TCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACC 868879 ||||||||||| || || || || ||| || |||||||||||| | ||| || | Sbjct 39961 TCGGCGACAAATTCAATATATTGCTTCATTAGTGTGGCGTTCATGCCTAGGAGAGCACAC 39902 Query 868880 GGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCTGCCTG 868939 || || | |||| ||| |||||||| ||| || | || || ||| ||| || | |||| Sbjct 39901 GGAAGAGCCTCGGTCAAAAACTCTTGCTCAATGCCAACAGCGTCGGTGATAATAT-CCTG 39843 Query 868940 G 868940 | Sbjct 39842 G 39842 >seq320 Length=20187 Score = 86.0 bits (94), Expect = 8e-11 Identities = 123/171 (72%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 507638 AACCGGCAGCCGTCGCTGCACATGGGCTCCATGCTCATGCA-CAAGGTGGTGCCCATGCC 507696 ||||| ||||| ||| |||||| || |||||| | || | | | ||| | ||||| Sbjct 15929 AACCGTCAGCCCTCGTTGCACAAGGAGTCCATGATGGGTCATCGTGTTCGTGTC-ATGCC 15987 Query 507697 CGGGCGCACCATGCGATTCAACCTGGCCGTCACGGGCACCTACAACGCCGACTTTGACGG 507756 | ||| | || || ||||| |||| || ||||||||||||| || || || Sbjct 15988 CTACTCTACCTTCCGCTTGAACCTTTCCGTTACTTCACCCTACAACGCCGATTTCGATGG 16047 Query 507757 CGACGAGATGAACCTGCACGTGCCCCAGTCCGAGACGGCGCGCGCCGAGGT 507807 |||||||||||| ||||||| ||||| |||||| | |||| || ||||| Sbjct 16048 TGACGAGATGAACTTGCACGTTCCCCAATCCGAGGAGACGCGTGCGGAGGT 16098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6104146875463771