Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq752 205 8e-48 seq326 104 2e-17 >seq752 Length=11106 Score = 205 bits (226), Expect = 8e-48 Identities = 1062/1676 (63%), Gaps = 60/1676 (4%) Strand=Plus/Plus Query 138358 ATCTCCCACACGGTCTTGTATAGATCACGAATAT-GTCGCGG-TATTGTTGCAATATTTT 138415 |||||||| || ||||| || ||| | || | | || || ||||| | || || | Sbjct 3965 ATCTCCCAAACAGTCTTATAGAGAGCCTTGATGTCGGCGGGGATATTGGGG--ATGTTCT 4022 Query 138416 GAATGCTCCCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAACT 138475 ||||| || || | ||||||||||| || ||||| |||| | ||| || | Sbjct 4023 GAATGGAACCATTCTCGGCAATGATGCGGTTCTTCATGGCATCAGACCAGAGACCCATGT 4082 Query 138476 TGATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGAC 138535 || | || || | || | ||| | |||||| |||||||| ||||| || || | Sbjct 4083 CGACGAGATCCTTGAGGAGCCAGGGGTTGACGACCTGGAATTCACCAGCCAAGACACGGC 4142 Query 138536 GAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCG 138595 | |||||||||| ||| | |||||||| | || ||||| |||||||| || | | Sbjct 4143 GCTGGTAAATGTTGGACGTGTATGGCTCAAAGCACTCATTGTTACCCAGAATTTGCGAGG 4202 Query 138596 TGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTC 138655 | | ||||| |||||| || | || | || || || | |||||| |||||| Sbjct 4203 TCGATGCGGTGGGCATGGGAGCGAGCAGCAACGAGTTGCGAATACCGTGCTCCTTGATCT 4262 Query 138656 GTTCCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACT 138715 | ||||| || ||| ||||| || || ||| || |||||||| ||| | | Sbjct 4263 GCTCCTTCAGACTGTCCCACTCCCATAACTCAGAAGGCTTGACATTCCACATGTCGAATT 4322 Query 138716 GTA----ACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCT 138771 | | || |||| | |||||| ||| | | | | | ||| || |||| Sbjct 4323 GAAGAATACCTTCCGAG----GCGGGAGAGCCCTTGAAGGTAGAGTAGGGGCCTTGCTCT 4378 Query 138772 TGCGCCAACTC----GTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTG 138827 | |||| ||| | ||| | || ||| | | ||| || || ||| ||||| Sbjct 4379 TTGGCCAGCTCAAGAGAGGCTGTC----AGGGCAGCGTGGTAGATGGTCTCGAAGATCTG 4434 Query 138828 CTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAAC-GCGT 138886 || |||||| |||||||||| |||| | |||||||| || | | ||| |||| Sbjct 4435 CTTGTTGAGCTCACGGGCCTCGGGAGACTCGAAGGGCATGCGCAG-AGCAAGAAAAGCGT 4493 Query 138887 CGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCGG 138946 | || || || || || || || |||| || ||||| |||| || ||| ||||| Sbjct 4494 CAGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCATGTT----GCTGTTGCGA 4549 Query 138947 ----CTTCGATAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACC 139002 | || || || |||| ||| || || ||||| ||||| | || || |||||||| Sbjct 4550 GCCTCCTCAATGGGGTAATGGTTGACGTCAATGATCTTGTTGAGGTTACGGACGACCACT 4609 Query 139003 TTAGTCGTATGCTTTAATCGT-TCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTC 139061 | ||| | | | | | | | || ||||| ||| | |||| |||||||| | | Sbjct 4610 TGAGTGACCT-CGTGGAGCTTCTGGAAGTCGTAGCGGCCTTCTTTGTAGTCGACGAAGGC 4668 Query 139062 -GACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGC 139120 | || | || | ||||| | |||||| || || || || || ||| | | Sbjct 4669 AGGCAG-------GGCAAGA---GAGGCCAAGTTGCAAACAGCAACCTCATCAGGGGCAC 4718 Query 139121 TGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGAT 139180 ||| || | || || | |||| || | || || || | || | || | Sbjct 4719 AGTACTCAATGATCTCCGTGCACAGGTTGGAGCTGCGAATGGTTCCCAGGTTCTTCTGGT 4778 Query 139181 TGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTG 139240 |||| |||| ||| || ||||| ||||| |||||| | || |||| ||||| || | Sbjct 4779 TGCTCTTTCTGTTGCAGGCATCCTTGTACAGCATAAAGGGGTTGCCCGTTTCGGTCTGGG 4838 Query 139241 TCTCTATAATGAATTTGAACAAGTCCCTAGCTTGTAT----TTGACGCACGTAAAGTTCG 139296 ||| | ||| | | | | | | || | || ||| || | | | Sbjct 4839 ACTCGAGGATGGAGTACCAGAGCTTCTGGGCACGAATAGTCTTGCGGCC----ACGGCCC 4894 Query 139297 TCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCG 139356 || ||||| |||||||||||||| | || ||| || || ||| |||| || | Sbjct 4895 TCACGCTCATACTTTTCGTAGAGAGCCTCAAATTCCTCGCCATAGCAATCAGCCAGGCCA 4954 Query 139357 CGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAAC 139416 | |||| || ||||||||||| | ||| | |||||| | ||||||| ||||||| Sbjct 4955 GGGCACTCGTTGGGACACATGAGGGTCCAATCCCCGTTCTTTTCGACGCGCTTCATGAAG 5014 Query 139417 AGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATG 139476 ||||| || ||||||| ||| | | | ||||| || || |||||| ||| | Sbjct 5015 AGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGATTTTCTTCCTTACCGTGG 5074 Query 139477 TTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCC 139536 || | || | ||| || || || ||||| |||||||| || || || |||||||| Sbjct 5075 TTCTTTCGCAAATCAAGAAAGTCGAACACGTCTGCGTGCCAAGGCTCGAGGTAGATGGCA 5134 Query 139537 ATTGCGCCTTTCCGTTTG---CCACCTTGATCGACGTGTCGTACAGCATTATTGAATACG 139593 | ||| || || ||| || || || || |||| || ||| || ||||| ||| Sbjct 5135 AATGCACCAGGTCGCTTGTTACCGCCCTGGTCAACGTATCTGGCAGTGTTGTTGAAGACG 5194 Query 139594 CGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGG--ATGGGACTGTTGC 139651 || | ||| || | ||| | | ||| |||||||||| ||| ||| | | | Sbjct 5195 CGAAGCATGGGAATGATGCCGTTGGATGTACCGTTGGTGC--CGGCAATGTAAGAGCCGG 5252 Query 139652 GAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGC 139711 ||| |||| | || || || | ||||||||| || | | ||||| || | | | Sbjct 5253 TAGCACGGATGCGGTGGACGTTCAAGCCGATTCCACCAGCCATCTTGGAGATCATGGCAC 5312 Query 139712 A-ATCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAG 139770 | || | | || ||||| || || ||||||||||||| ||| ||| || || Sbjct 5313 AGGTCTTG-AGAGTGTCGTAGATGCCATCAATGCTGTCGTCCTTCATGTCGACTAGGAAA 5371 Query 139771 CATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTG 139830 || || || || || | || || || || || ||||| ||||| ||| Sbjct 5372 CAGGAAGACAGCTGACACTGGGGGGTACCAGCGTTGAAGAGTGTAGGTGAGGCGTGGGTG 5431 Query 139831 AACATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGG 139890 || | | | ||||| | | ||| || || | ||| | |||||| ||| Sbjct 5432 AAGAGCTTGCTGGACATGAGGTGGTAGGTCTCCAAAACGCGCTCAATATTGTCTCCCCAA 5491 Query 139891 ATACCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtt 139950 |||||||| | || ||||| | ||| || ||| || ||| | | | ||| | || | Sbjct 5492 ATACCGACCGCAACGCGCATAATCATGTGCTGGGGTCGCTCGACAATCTTGCCGTTGAGT 5551 Query 139951 tttttCAGATAACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006 || ||||| |||| || |||||| |||||||||| ||||||||| || Sbjct 5552 TTGAGAAGATATGATCTCTCCAGAGTCTTGAAGCCAAAGTATTGATAGTTGAAGTC 5607 >seq326 Length=20000 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | || || || ||||| || | ||||| ||| | | Sbjct 12756 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACTATCACATTGGAAGTCGAATCTTCG 12697 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | || | ||||| ||||| |||||||| ||||| || || || || || Sbjct 12696 GATACAATCGATAATGTAAAGGCTAAGATTCAAGACAAGGAAGGCATTCCCCCTGACCAG 12637 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | |||||||| || || ||||| |||||| ||| || | || || ||| Sbjct 12636 CAGCGACTCATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGAACTTTGGCCGACTACAAC 12577 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| || || || || ||||| |||| |||| || || Sbjct 12576 ATTCAGAAGGAGTCTACTCTGCATTTGGTCCTGCGTCTGCGGGGTGG 12530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449692542297640