Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15]
36,463 sequences; 36,098,533 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq752 205 8e-48
seq326 104 2e-17
>seq752
Length=11106
Score = 205 bits (226), Expect = 8e-48
Identities = 1062/1676 (63%), Gaps = 60/1676 (4%)
Strand=Plus/Plus
Query 138358 ATCTCCCACACGGTCTTGTATAGATCACGAATAT-GTCGCGG-TATTGTTGCAATATTTT 138415
|||||||| || ||||| || ||| | || | | || || ||||| | || || |
Sbjct 3965 ATCTCCCAAACAGTCTTATAGAGAGCCTTGATGTCGGCGGGGATATTGGGG--ATGTTCT 4022
Query 138416 GAATGCTCCCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAACT 138475
||||| || || | ||||||||||| || ||||| |||| | ||| || |
Sbjct 4023 GAATGGAACCATTCTCGGCAATGATGCGGTTCTTCATGGCATCAGACCAGAGACCCATGT 4082
Query 138476 TGATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGAC 138535
|| | || || | || | ||| | |||||| |||||||| ||||| || || |
Sbjct 4083 CGACGAGATCCTTGAGGAGCCAGGGGTTGACGACCTGGAATTCACCAGCCAAGACACGGC 4142
Query 138536 GAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCG 138595
| |||||||||| ||| | |||||||| | || ||||| |||||||| || | |
Sbjct 4143 GCTGGTAAATGTTGGACGTGTATGGCTCAAAGCACTCATTGTTACCCAGAATTTGCGAGG 4202
Query 138596 TGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTC 138655
| | ||||| |||||| || | || | || || || | |||||| ||||||
Sbjct 4203 TCGATGCGGTGGGCATGGGAGCGAGCAGCAACGAGTTGCGAATACCGTGCTCCTTGATCT 4262
Query 138656 GTTCCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACT 138715
| ||||| || ||| ||||| || || ||| || |||||||| ||| | |
Sbjct 4263 GCTCCTTCAGACTGTCCCACTCCCATAACTCAGAAGGCTTGACATTCCACATGTCGAATT 4322
Query 138716 GTA----ACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCT 138771
| | || |||| | |||||| ||| | | | | | ||| || ||||
Sbjct 4323 GAAGAATACCTTCCGAG----GCGGGAGAGCCCTTGAAGGTAGAGTAGGGGCCTTGCTCT 4378
Query 138772 TGCGCCAACTC----GTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTG 138827
| |||| ||| | ||| | || ||| | | ||| || || ||| |||||
Sbjct 4379 TTGGCCAGCTCAAGAGAGGCTGTC----AGGGCAGCGTGGTAGATGGTCTCGAAGATCTG 4434
Query 138828 CTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAAC-GCGT 138886
|| |||||| |||||||||| |||| | |||||||| || | | ||| ||||
Sbjct 4435 CTTGTTGAGCTCACGGGCCTCGGGAGACTCGAAGGGCATGCGCAG-AGCAAGAAAAGCGT 4493
Query 138887 CGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCGG 138946
| || || || || || || || |||| || ||||| |||| || ||| |||||
Sbjct 4494 CAGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCATGTT----GCTGTTGCGA 4549
Query 138947 ----CTTCGATAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACC 139002
| || || || |||| ||| || || ||||| ||||| | || || ||||||||
Sbjct 4550 GCCTCCTCAATGGGGTAATGGTTGACGTCAATGATCTTGTTGAGGTTACGGACGACCACT 4609
Query 139003 TTAGTCGTATGCTTTAATCGT-TCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTC 139061
| ||| | | | | | | | || ||||| ||| | |||| |||||||| | |
Sbjct 4610 TGAGTGACCT-CGTGGAGCTTCTGGAAGTCGTAGCGGCCTTCTTTGTAGTCGACGAAGGC 4668
Query 139062 -GACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGC 139120
| || | || | ||||| | |||||| || || || || || ||| | |
Sbjct 4669 AGGCAG-------GGCAAGA---GAGGCCAAGTTGCAAACAGCAACCTCATCAGGGGCAC 4718
Query 139121 TGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGAT 139180
||| || | || || | |||| || | || || || | || | || |
Sbjct 4719 AGTACTCAATGATCTCCGTGCACAGGTTGGAGCTGCGAATGGTTCCCAGGTTCTTCTGGT 4778
Query 139181 TGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTG 139240
|||| |||| ||| || ||||| ||||| |||||| | || |||| ||||| || |
Sbjct 4779 TGCTCTTTCTGTTGCAGGCATCCTTGTACAGCATAAAGGGGTTGCCCGTTTCGGTCTGGG 4838
Query 139241 TCTCTATAATGAATTTGAACAAGTCCCTAGCTTGTAT----TTGACGCACGTAAAGTTCG 139296
||| | ||| | | | | | | || | || ||| || | | |
Sbjct 4839 ACTCGAGGATGGAGTACCAGAGCTTCTGGGCACGAATAGTCTTGCGGCC----ACGGCCC 4894
Query 139297 TCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCG 139356
|| ||||| |||||||||||||| | || ||| || || ||| |||| || |
Sbjct 4895 TCACGCTCATACTTTTCGTAGAGAGCCTCAAATTCCTCGCCATAGCAATCAGCCAGGCCA 4954
Query 139357 CGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAAC 139416
| |||| || ||||||||||| | ||| | |||||| | ||||||| |||||||
Sbjct 4955 GGGCACTCGTTGGGACACATGAGGGTCCAATCCCCGTTCTTTTCGACGCGCTTCATGAAG 5014
Query 139417 AGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATG 139476
||||| || ||||||| ||| | | | ||||| || || |||||| ||| |
Sbjct 5015 AGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGATTTTCTTCCTTACCGTGG 5074
Query 139477 TTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCC 139536
|| | || | ||| || || || ||||| |||||||| || || || ||||||||
Sbjct 5075 TTCTTTCGCAAATCAAGAAAGTCGAACACGTCTGCGTGCCAAGGCTCGAGGTAGATGGCA 5134
Query 139537 ATTGCGCCTTTCCGTTTG---CCACCTTGATCGACGTGTCGTACAGCATTATTGAATACG 139593
| ||| || || ||| || || || || |||| || ||| || ||||| |||
Sbjct 5135 AATGCACCAGGTCGCTTGTTACCGCCCTGGTCAACGTATCTGGCAGTGTTGTTGAAGACG 5194
Query 139594 CGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGG--ATGGGACTGTTGC 139651
|| | ||| || | ||| | | ||| |||||||||| ||| ||| | | |
Sbjct 5195 CGAAGCATGGGAATGATGCCGTTGGATGTACCGTTGGTGC--CGGCAATGTAAGAGCCGG 5252
Query 139652 GAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGC 139711
||| |||| | || || || | ||||||||| || | | ||||| || | | |
Sbjct 5253 TAGCACGGATGCGGTGGACGTTCAAGCCGATTCCACCAGCCATCTTGGAGATCATGGCAC 5312
Query 139712 A-ATCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAG 139770
| || | | || ||||| || || ||||||||||||| ||| ||| || ||
Sbjct 5313 AGGTCTTG-AGAGTGTCGTAGATGCCATCAATGCTGTCGTCCTTCATGTCGACTAGGAAA 5371
Query 139771 CATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTG 139830
|| || || || || | || || || || || ||||| ||||| |||
Sbjct 5372 CAGGAAGACAGCTGACACTGGGGGGTACCAGCGTTGAAGAGTGTAGGTGAGGCGTGGGTG 5431
Query 139831 AACATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGG 139890
|| | | | ||||| | | ||| || || | ||| | |||||| |||
Sbjct 5432 AAGAGCTTGCTGGACATGAGGTGGTAGGTCTCCAAAACGCGCTCAATATTGTCTCCCCAA 5491
Query 139891 ATACCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtt 139950
|||||||| | || ||||| | ||| || ||| || ||| | | | ||| | || |
Sbjct 5492 ATACCGACCGCAACGCGCATAATCATGTGCTGGGGTCGCTCGACAATCTTGCCGTTGAGT 5551
Query 139951 tttttCAGATAACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006
|| ||||| |||| || |||||| |||||||||| ||||||||| ||
Sbjct 5552 TTGAGAAGATATGATCTCTCCAGAGTCTTGAAGCCAAAGTATTGATAGTTGAAGTC 5607
>seq326
Length=20000
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || | || || || ||||| || | ||||| ||| | |
Sbjct 12756 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACTATCACATTGGAAGTCGAATCTTCG 12697
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| ||| | || | ||||| ||||| |||||||| ||||| || || || || ||
Sbjct 12696 GATACAATCGATAATGTAAAGGCTAAGATTCAAGACAAGGAAGGCATTCCCCCTGACCAG 12637
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || | |||||||| || || ||||| |||||| ||| || | || || |||
Sbjct 12636 CAGCGACTCATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGAACTTTGGCCGACTACAAC 12577
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
||||| ||||| || || || || ||||| |||| |||| || ||
Sbjct 12576 ATTCAGAAGGAGTCTACTCTGCATTTGGTCCTGCGTCTGCGGGGTGG 12530
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449692542297640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |