Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq31442 131 3e-24 seq435 131 3e-24 seq752 107 3e-17 seq31 104 4e-16 >seq31442 Length=230 Score = 131 bits (144), Expect = 3e-24 Identities = 92/105 (88%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 ||||||||||||||||||||||||| || ||| | || |||||||| ||||||||| | | Sbjct 45 CCAACTACCTCGACATCAAGCCCCTACTTGATGTTGGCTGCAAGACGGTGGCCAACATGA 104 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 ||||||||||||| ||||| || ||||||||||| || ||||||| Sbjct 105 TCAAGGGCAAGTCACCCGAAGAAATCCGCAAGACTTTCAACATCA 149 >seq435 Length=16778 Score = 131 bits (144), Expect = 3e-24 Identities = 92/105 (88%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 ||||||||||||||||||||||||| || ||| | || |||||||| ||||||||| | | Sbjct 3187 CCAACTACCTCGACATCAAGCCCCTACTTGATGTTGGCTGCAAGACGGTGGCCAACATGA 3128 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 ||||||||||||| ||||| || ||||||||||| || ||||||| Sbjct 3127 TCAAGGGCAAGTCACCCGAAGAAATCCGCAAGACTTTCAACATCA 3083 >seq752 Length=11106 Score = 107 bits (118), Expect = 3e-17 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || |||||| || || | || |||| ||| |||||||| |||||||| | | |||||| Sbjct 5158 GCCCTGGTCAACGTATCTGGCAGTGTTGTTGAAGACGCGAAGCATGGGAATGATGCCGTT 5217 Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAA 2073656 ||| ||||||||||| || | ||| | ||| | || || | ||| || || Sbjct 5218 GGATGTACCGTTGGTGCCGGCAATGTAAGAGCCGGTAGCACGGATGCGGTGGACGTTCAA 5277 Query 2073657 GCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716 |||||| || || ||| ||||||||| | || || | || || || ||||||||||| Sbjct 5278 GCCGATTCCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATGCC 5337 Query 2073717 CTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGA 2073758 || || |||| |||||||||| | || || || || || Sbjct 5338 ATCAATGCTGTCGTCCTTCATGTCGACTAGGAAACAGGAAGA 5379 >seq31 Length=45476 Score = 104 bits (114), Expect = 4e-16 Identities = 184/261 (70%), Gaps = 7/261 (3%) Strand=Plus/Minus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 ||||||| ||||| ||| || || || ||| |||||| ||||| |||||||| | | Sbjct 40098 TGACGCCAGCCTTTTGATATTCTCCAACTCGCTTCTCGAAGAAGTTTGTCTTGCCACCCA 40039 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCC-- 794008 || || ||||| | ||| |||||||| || ||| ||| ||| || Sbjct 40038 AGGAAATGTTTTCCATGAAATCGAAGGGGTTGGCGGTTTTGTATACCTTTTCGTTACCAA 39979 Query 794009 GAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTT 794068 |||| || ||| ||||| |||||||| |||||||| || || ||| || | |||||| Sbjct 39978 GAGCAAC-CAAT-AGGCGATCGGCGACAAATTCAATATATTGCTTCATTAGTGTGGCGTT 39921 Query 794069 CATGCCGATGAGCGC-CACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGG 794127 |||||| | ||| || ||| || || | |||| | | |||||||| ||| || | || | Sbjct 39920 CATGCCTAGGAGAGCACAC-GGAAGAGCCTCGGTCAAAAACTCTTGCTCAATGCCAACAG 39862 Query 794128 CCTCGATGATGATCTGCCTGG 794148 | ||| |||| || | ||||| Sbjct 39861 CGTCGGTGATAATAT-CCTGG 39842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7912367664382257