Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_022343.1 Length=159991 Score E Sequences producing significant alignments: (Bits) Value seq20645 114 1e-20 >seq20645 Length=266 Score = 114 bits (126), Expect = 1e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 15050 CTTCCGACCCCCATCATGGCAGGCGTTCGTACTCCTACCCGTCAGTTCAGTTCATGCGTT 15109 || || || || |||||||| || || ||||| || || |||||||| || |||||||| Sbjct 192 CTGCCAACGCCTATCATGGCGGGAGTGCGTACGCCGACTCGTCAGTTTAGCTCATGCGTA 133 Query 15110 CTGATCAAAACTGGCGACACGCTGGATTCCATCAACGCAACCGCCAAATCTATCGTAGAC 15169 ||||| || |||||| | |||||||||||||||| || || |||||||||| | Sbjct 132 CTGATTGAATGTGGCGATAGCTTGGATTCCATCAACGCGACAGCATCATCTATCGTAAAA 73 Query 15170 TATGTGAGCAAGCGTGCTGGCATCGG 15195 || |||||| | || ||||| ||||| Sbjct 72 TACGTGAGCCAACGCGCTGGTATCGG 47 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511609908267480