Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq26 127 1e-24 seq326 118 7e-22 seq433 105 4e-18 >seq26 Length=47302 Score = 127 bits (140), Expect = 1e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| || | ||||||||||||||| ||||| ||||| | ||| |||| |||| Sbjct 11984 CAGCACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCACAGGGTGCGGCCATC 12043 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || || ||||| |||||||||||||| | || | ||||||||||| Sbjct 12044 CTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTGTC 12103 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || |||||| | || | || | ||| || |||| ||| || || Sbjct 12104 CTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGT 12163 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| ||||||||||| || || || |||||||| Sbjct 12164 CTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT 12196 >seq326 Length=20000 Score = 118 bits (130), Expect = 7e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| ||| ||||||||| ||||| ||||| | || |||| | || Sbjct 13074 AGGACGAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTGCGACCGTCC 13133 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || |||||||| ||||||||||| || |||||||| | || | |||||||| || Sbjct 13134 TCAAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCGGGGGGGATTCCCTCCTTATCC 13193 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||||| | || | ||| | |||||| || | || |||||| Sbjct 13194 TGAATCTTCGACTTGACATTGTCAATGGTATCAGACGACTCGACCTCGAGAGTAATGGTC 13253 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || ||||||||||| || ||||| |||||| Sbjct 13254 TTGCCGGTGAGGGTCTTGACGAAGATTTGCATG 13286 Score = 98.7 bits (108), Expect = 6e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 34781 GTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCG 34840 || || |||||||| ||||| ||||| || |||| | || || || ||||||||| Sbjct 12332 GTACTTTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTCTAGCTGCTTTCCG 12391 Query 34841 GCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTG 34900 || || || |||||||||||||| | || | |||||||| || | || || |||| Sbjct 12392 GCAAAAATAAGTCGTTGCTGGTCGGGAGGGATTCCCTCCTTATCCTGAATCTTGGATTTG 12451 Query 34901 ACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTC 34960 || | | || | ||| | ||||| || | ||| || |||||||| || | |||| Sbjct 12452 ACAGTGTCGATGGTATCAGCAGATTCGACTTCCAAGGTGATAGTCTTTCCAGTCAAGGTC 12511 Query 34961 TTTACAAAGATCTGCAT 34977 || ||||| || ||||| Sbjct 12512 TTGACAAAAATTTGCAT 12528 Score = 95.1 bits (104), Expect = 8e-15 Identities = 146/206 (71%), Gaps = 8/206 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| ||| |||||||| || || ||||| | ||| | || |||| Sbjct 12773 AGTACAAGGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGCGAGGGTACGACCATCT 12832 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| || |||||||||| ||| ||||| || | || | || ||||| || Sbjct 12833 TCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGATCAGGAGGAATACCTTCCTTATCC 12892 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || |||||| || | ||||| || || |||||| |||| ||| || Sbjct 12893 TGAATCTTCGATTTGAC--AT--TGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGAT 12948 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAA 34967 ||||||||| || | ||||| |||| Sbjct 12949 GGTCTTTCCAGTCAAAGTCTTGACAA 12974 >seq433 Length=16792 Score = 105 bits (116), Expect = 4e-18 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||||||||| ||||| | ||| | || | || || || ||||| || ||||| | Sbjct 4877 CCTTCTGAATGTTGTAGTCGCACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAAA 4936 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 ||| ||| |||||||| | || | ||||||||||| | ||||| ||||| Sbjct 4937 TCAATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGCCTTGACATTGT 4996 Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 | |||| || || |||||| |||| ||| |||||||| ||||| |||||||| || | Sbjct 4997 CGATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTAACGA 5056 Query 34968 A 34968 | Sbjct 5057 A 5057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325548064460597