Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_023006.1 Length=43564 Score E Sequences producing significant alignments: (Bits) Value seq25565 122 2e-23 seq23331 80.6 7e-11 >seq25565 Length=235 Score = 122 bits (134), Expect = 2e-23 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 23540 CCTTGCGCAGATACTCGCCGGCAATCTCGGCGACCTTGCCGAAGAACACGACGCGGTGCC 23599 || ||||| | ||||||||||| |||||||| || |||||||| | ||||| ||||||| Sbjct 7 CCCTGCGCCGGTACTCGCCGGCGATCTCGGCTACTTTGCCGAACAGAACGACACGGTGCC 66 Query 23600 ATTCGGTCTTTTCCTTGCGCTCGCCGGTCTGCTTGTCCTTCCAGGTTTCCGACGTGGCCA 23659 ||||||| ||||| | || || ||||||||||||||||||| | || | || || | Sbjct 67 ATTCGGTGCGTTCCTGGAGCAGGCTGGTCTGCTTGTCCTTCCAGCTGTCGGTGGTTGCAA 126 Query 23660 GGCTGATGTTGCAGACGGCATCGCCGTTTTGCAGGTAGCG 23699 | |||||||| || || | ||| || |||| ||||| Sbjct 127 GCGTGATGTTGGTCACCGCGTTGCCATTGGGCAGATAGCG 166 >seq23331 Length=246 Score = 80.6 bits (88), Expect = 7e-11 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 21063 TGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATCC 21122 ||||| ||||||| ||||||||| ||||||| || ||| | ||| || ||||||||| Sbjct 126 TGGCGCACCCGACACGATTCGAACGTGTGACCTTTGCCTTCGGAGGGCAACGCTCTATCC 185 Query 21123 AGCTGAGCTACGGG 21136 |||||||||||||| Sbjct 186 AGCTGAGCTACGGG 199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139222890635556