Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq326 107 2e-18 seq26 82.4 6e-11 >seq326 Length=20000 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| ||||| || ||||| || || || | ||| || || Sbjct 12756 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACTATCACATTGGAAGTCGAATCTTCG 12697 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | ||||| |||||| || || |||||| | ||| || ||| Sbjct 12696 GATACAATCGATAATGTAAAGGCTAAGATTCAAGACAAGGAAGGCATTCCCCCTGACCAG 12637 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| |||| || | ||| ||||| ||||| ||||| | | ||| |||| ||||||||| Sbjct 12636 CAGCGACTCATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGAACTTTGGCCGACTACAAC 12577 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| ||||||||||| |||| |||| || | |||| || || Sbjct 12576 ATTCAGAAGGAGTCTACTCTGCATTTGGTCCTGCGTCTGCGGGGTGG 12530 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||||||||| || || || || || || || ||| | ||| || ||| Sbjct 12528 ATGCAAATTTTTGTCAAGACCTTGACTGGAAAGACTATCACCTTGGAAGTCGAATCTGCT 12469 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | || ||| |||||| ||||| || || | || || ||| Sbjct 12468 GATACCATCGACACTGTCAAATCCAAGATTCAGGATAAGGAGGGAATCCCTCCCGACCAG 12409 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || ||||||||| ||| || || ||||| || |||| | || || ||||||||| Sbjct 12408 CAACGACTTATTTTTGCCGGAAAGCAGCTAGAAGACGGCCGCACGCTGAGCGACTACAAC 12349 Query 107736 ATTCAAAAGGAGTCTACGTTGCA 107758 || || ||||| ||| ||||| Sbjct 12348 ATCCAGAAGGAAAGTACTTTGCA 12326 >seq26 Length=47302 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||| ||||| |||||||| | || || || || || ||| | || |||| || Sbjct 12199 AAGATGCAGATTTTCGTCAAAACCCTCACGGGGAAGACTATCACCCTTGAGGTGGAGTCT 12140 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 ||| || ||| | | || || ||||| || || || ||| | ||| ||| Sbjct 12139 TCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAC 12080 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 ||||| ||||||| | ||| ||||| ||||| ||||| | | || || |||||| Sbjct 12079 CAGCAACGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGTGCGACTAC 12020 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| || |||||| || |||| ||||| || | |||| || || Sbjct 12019 AACATCCAGAAGGAGAGCACCCTGCATTTGGTGCTGCGCCTGCGTGGCGG 11970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398699542017007