Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq23831 98.7 7e-15 >seq23831 Length=243 Score = 98.7 bits (108), Expect = 7e-15 Identities = 115/155 (74%), Gaps = 3/155 (2%) Strand=Plus/Minus Query 282320 TCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATA 282379 ||||| |||| ||| || | ||||| || ||||| || || || || ||||| || Sbjct 159 TCTTTTCCTTG---TTTGTCTAATCCATAAGCTAAAGCTGCTGCTGTAGGCTCATTGATG 103 Query 282380 ATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAA 282439 || | || || || | ||| |||||| ||||| ||||| || ||||| | ||||| Sbjct 102 ATACGCATTACTTTTAAACCTGCAATTTCACCTGCTTCTTTTGTAGCTTGACGTTGTGCG 43 Query 282440 TCGTTAAAATATGCAGGAACAGTAATAACGGCATC 282474 |||||||| ||||| |||||||||||||| || || Sbjct 42 TCGTTAAAGTATGCTGGAACAGTAATAACTGCTTC 8 Score = 86.0 bits (94), Expect = 5e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 86114 CTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAAC 86173 |||| || || || | ||||||||| || || ||||| || || | || | ||||| Sbjct 143 CTAATCCATAAGCTAAAGCTGCTGCTGTAGGCTCATTGATGATACGCATTACTTTTAAAC 84 Query 86174 CCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTA 86233 | ||||||| | | | || || ||||| | |||||||| ||||| |||||||| | Sbjct 83 CTGCAATTTCACCTGCTTCTTTTGTAGCTTGACGTTGTGCGTCGTTAAAGTATGCTGGAA 24 Query 86234 CAGTAATAACTGCTT 86248 ||||||||||||||| Sbjct 23 CAGTAATAACTGCTT 9 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3738840220792638