Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_023688.1 Length=222006 Score E Sequences producing significant alignments: (Bits) Value seq20645 104 3e-17 >seq20645 Length=266 Score = 104 bits (114), Expect = 3e-17 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 33046 GCACGAATAGCACCACCATTGATACCGATACCAGCTCTCTTGCTGATATAGTCAACGATA 33105 ||||| ||| ||| | ||||||||||||||||| | | ||| | || | |||||| Sbjct 23 GCACGGATACGACCGGCGTTGATACCGATACCAGCGCGTTGGCTCACGTATTTTACGATA 82 Query 33106 GAACTAGCGGTTGCGTTAATGCTATCGAGTTCATCACCACTTTCAATCTTGACGCATGAG 33165 || || || ||||| ||| ||| | ||| |||| ||||||| ||||||||| Sbjct 83 GATGATGCTGTCGCGTTGATGGAATCCAAGCTATCGCCACATTCAATCAGTACGCATGAG 142 Query 33166 CTAAACTGACGGGTCGGAGTACGAACACCAGCCAGAATAGGAGTCGGAAG 33215 ||||||||||| ||||| ||||| || || |||| ||||| || || || Sbjct 143 CTAAACTGACGAGTCGGCGTACGCACTCCCGCCATGATAGGCGTTGGCAG 192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 709967458149680