Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq752 260 1e-64 seq26 123 2e-23 seq433 116 4e-21 seq326 107 2e-18 seq31334 89.7 5e-13 >seq752 Length=11106 Score = 260 bits (288), Expect = 1e-64 Identities = 996/1545 (64%), Gaps = 53/1545 (3%) Strand=Plus/Plus Query 148260 TTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGT 148319 || || ||||| || || || || | || || ||| | || | |||| ||| | || Sbjct 4109 TTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGC 4168 Query 148320 TCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACC 148379 ||||| |||| ||||| |||| ||| |||| ||||| ||| ||||||||| || | | Sbjct 4169 TCAAAGCACTCATTGTTACCCAGAATTTGCGAGGTCGATGCGGTGGGCATGGGAGCGAGC 4228 Query 148380 AGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAG 148439 |||| ||||||||| | |||| | | || || | ||||||| |||| ||||| Sbjct 4229 AGCAACGAGTTGCGAATACCGTGCTCCTTGATCTGCTCCTTCAGACTGTCCCACTCCCAT 4288 Query 148440 AGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTG 148499 | | || || | || |||||||||||| | || ||||| || ||||| | Sbjct 4289 AACTCAGAAGGCTTGACATTCCACATGTCGAATTGAAGAATACCTTCCGAGGCGGGAGAG 4348 Query 148500 CCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCT-CGAGCGC 148558 |||| | | | ||| || || ||| | ||||| || || | || || || Sbjct 4349 CCCTTGAAGGTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTC-AAGAGAGGCTGTCAGGGC 4407 Query 148559 GCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCG---CTTTC 148615 ||| ||| || |||||| || ||| |||||||| | | | | |||| || Sbjct 4408 AGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGC-TCACGG--GCCTCGGGAGACTC 4464 Query 148616 GTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGG 148675 | | ||||| ||||| | ||| ||||| ||||| ||||| || || || || ||||| Sbjct 4465 GAAGGGCATGCGCAGAGCAAGAAAAGCGTCAGCAAGACCCTGAACACCAACACCGATGGG 4524 Query 148676 CCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGCGGATAGTGGTTGCGGTCGATGAT 148735 || ||| |||||| | ||| || ||| | || || |||||| ||| ||||| Sbjct 4525 TCGATGTCGCATGTTGCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACGTCAATGAT 4584 Query 148736 CTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAATTCAAAATCGTA--- 148792 ||||| || || || || ||||| | || | | | ||| | || ||||| Sbjct 4585 CTTGTTGAGGTTACGGACGACCACTTGAGTGACCTCGTGGAGCTTCTGGAAGTCGTAGCG 4644 Query 148793 ------CTTGTCATCTACG-ATGCATCGGTTCACGGCGATAGAGGCTAGATTGCACACGG 148845 |||| || ||| | ||| || || ||| | |||||| | ||||| || | Sbjct 4645 GCCTTCTTTGTAGTCGACGAAGGCA--GG--CAGGGCAAGAGAGGCCAAGTTGCAAACAG 4700 Query 148846 CCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATT---GCTGCATTTGA 148902 | |||||| ||||| | |||||| | |||||| | |||||| || ||||| || Sbjct 4701 CAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAGGTTGGAGCTGCGAATGG 4760 Query 148903 TCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACG 148962 | |||| |||||| || |||||||| |||||||| || |||||||||||||| | | Sbjct 4761 T---TCCCAGGTTCTTCTGGTTGCTCTTTCTGTTGCAGGCATCCTTGTACAGCATAAAGG 4817 Query 148963 GTCCGCCAGTTTCCACCTGCGTTTCCACTATGAACCGATGCAGGTCCTGCGCGCGCA--- 149019 | ||| ||||| ||| | || | ||| | || | ||| || || | Sbjct 4818 GGTTGCCCGTTTCGGTCTGGGACTCGAGGATGGAGTACCAGAGCTTCTGGGCACGAATAG 4877 Query 149020 -CTTGCTGCTCGTAGCGACCCTCCTGCTCGTA--TAAAGTATACAGCCGCTCGAACGCCT 149076 ||||| || || ||||| |||| || | ||| | ||| ||| || ||| Sbjct 4878 TCTTGCGGC----CACGGCCCTCACGCTCATACTTTTCGTAGAGAGC--CTCAAATTCCT 4931 Query 149077 CGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACGCCGT 149136 |||| |||||||| | || || ||||||| || || |||||||| | ||| | |||| Sbjct 4932 CGCCATAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGGGTCCAATCCCCGT 4991 Query 149137 CCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGCGCG 149196 | | ||||||||||| || ||||| || | ||| || || | ||||||||| | Sbjct 4992 TCTTTTCGACGCGCTTCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAG 5051 Query 149197 CCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGTCCGCGT 149256 | ||||| || ||| |||| | || | | ||| | ||| |||| Sbjct 5052 CACGATTTTCTTCCTTACCGTGGTTCTTTCGCAAATCAAGAAAGTCGAACACGTCTGCGT 5111 Query 149257 GCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTTG---CCGCCCTGGTCGACGT 149313 |||| ||||| | ||| | || | || || |||||| ||||||||||| |||| Sbjct 5112 GCCAAGGCTCGAGGTAGATGGCAAATGCACCAGGTCGCTTGTTACCGCCCTGGTCAACGT 5171 Query 149314 GGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGCCGTTAG 149373 | | ||||||| || || |||| ||| || ||||| ||| || ||||| | Sbjct 5172 ATCTGGCAGTGTTGTTGAAGACGCGAAGCATGGGAATGATGCCGTTGGATGTACCGTTGG 5231 Query 149374 TAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGCC-G 149432 | | |||| | |||| || || | ||| ||||| | |||||| || || | Sbjct 5232 TGCCGGCAATGTAAGAGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGATTCCACCAG 5291 Query 149433 CCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCG 149492 || | ||| ||||| || ||| ||| || ||||||||| || ||||||||| Sbjct 5292 CCAT-CTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATGCCATCAATGCTGTCG 5350 Query 149493 CGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAA---ACGCGTGCCGGCCGCG 149549 ||||||| | || || || || ||| || || | | || || || | Sbjct 5351 TCCTTCATGTCGACTAGGAAACAGGAAGACA---GCTGACACTGGGGGGTACCAGCGTTG 5407 Query 149550 AACATGGTGGGGCTGGCGTGTGT-AAAATATTTCTGGCTCATCATCTCGTACGACTCGAG 149608 || | || || |||||| || || | || |||| ||| | | ||| | ||| | Sbjct 5408 AAGAGTGTAGGTGAGGCGTGGGTGAAGAGCTTGCTGG-ACATGAGGTGGTAGGTCTCCAA 5466 Query 149609 CACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGG 149668 ||||| || || | || || || || | || |||||||| | ||| ||||| || Sbjct 5467 AACGCGCTCAATATTGTCTCCCCAAATACCGACCGCAACGCGCATAATCATGTGCTGGGG 5526 Query 149669 TCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCC 149728 |||||| | | ||| | |||||| | || | || || |||||| |||| Sbjct 5527 TCGCTCGACAATCTTGCCGTTGAGTTTGAGAAGATATGATCTCTCCAGAGTCTTGAAGCC 5586 Query 149729 AAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGCGTC 149773 |||||| | |||| ||||| | | ||| | |||| |||| ||| Sbjct 5587 AAAGTATTGATAGTTGAAGTCTCTGTCGTAGACAATAGCGGAGTC 5631 >seq26 Length=47302 Score = 123 bits (136), Expect = 2e-23 Identities = 153/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | |||| ||| ||||| || ||||| |||| || ||| | | | |||||||| Sbjct 11991 AAATGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCACAGGGTGCGGCCA-TCCTCGAG 12049 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || || | || || || |||||||| || || ||||| |||||||| ||| Sbjct 12050 CTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGAT 12109 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | || | ||||||| | |||||| || | ||||| || || || Sbjct 12110 CTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTCCC 12169 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| |||||||||||||| Sbjct 12170 CGTGAGGGTTTTGACGAAAATCTGCAT 12196 >seq433 Length=16792 Score = 116 bits (128), Expect = 4e-21 Identities = 146/197 (74%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 133473 TTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTAAAT 133531 ||||| || ||||| |||| || || ||| |||||| ||||||||||| ||| |||| Sbjct 4879 TTCTGAATGTTGTAGTCGCACAGGGTTCGACC-GTCCTCAAGCTGCTTGCCAGCGAAAAT 4937 Query 133532 GAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTC 133591 | ||||||||||| || || ||||| |||||||| ||| || ||||| | || Sbjct 4938 CAATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGCCTTGACATTGTC 4997 Query 133592 AACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAA 133651 | |||||| | || ||| || || | ||||| ||| ||||| ||||| || || ||||| Sbjct 4998 GATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTAACGAA 5057 Query 133652 AATCTGCATGGCTTATT 133668 | ||| |||| |||| Sbjct 5058 A--CTGGATGGTGTATT 5072 >seq326 Length=20000 Score = 107 bits (118), Expect = 2e-18 Identities = 146/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || ||||| || | | ||| ||| |||||| |||||||| | Sbjct 13088 GGTTGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTGCGACC-GTCCTCAAGCTGCTTTC 13146 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || || |||||||||||||| ||||| || ||||| || ||||| || Sbjct 13147 CAGCGAAGATCAGACGCTGCTGGTCGGGGGGGATTCCCTCCTTATCCTGAATCTTCGACT 13206 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | |||| || || | | ||| || |||| || | ||| |||||||| || | Sbjct 13207 TGACATTGTCAATGGTATCAGACGACTCGACCTCGAGAGTAATGGTCTTGCCGGTGAGGG 13266 Query 133642 TTTTTACGAAAATCTGCATGG 133662 | || ||||| || ||||||| Sbjct 13267 TCTTGACGAAGATTTGCATGG 13287 Score = 100 bits (110), Expect = 3e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || ||||| ||||| || ||||| ||| ||| || | | | |||||||| Sbjct 12551 AAATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCCAAAGTTCGGCCA-TCCTCGAG 12609 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || || | ||||| ||||||||||| || || |||||||||||||| || Sbjct 12610 CTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGAAT 12669 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | || | || || | | || || || | |||| || ||||| Sbjct 12670 CTTAGCCTTTACATTATCGATTGTATCCGAAGATTCGACTTCCAATGTGATAGTCTTGCC 12729 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| ||| || ||||| |||||||| Sbjct 12730 AGTCAAAGTCTTGACGAAGATCTGCAT 12756 >seq31334 Length=230 Score = 89.7 bits (98), Expect = 5e-13 Identities = 107/144 (74%), Gaps = 6/144 (4%) Strand=Plus/Plus Query 148817 CACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGAT 148876 || ||| | |||||| | ||||| || || |||||| ||||| | |||||| | ||| Sbjct 80 CAGGGCAAGAGAGGCCAAGTTGCAAACAGCAACCTCATCAGGGGCACAGTACTCGATGAT 139 Query 148877 CTCGGCGCACAGATTG---CTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCT 148933 ||| | |||||| ||| |||| || | |||| |||||| || |||||||| || Sbjct 140 CTCCGTGCACAGGTTGGAGCTGCGAATGGTT---CCCAGGTTCTTCTGGTTGCTCTTTCT 196 Query 148934 GTTGCACGCGTCCTTGTACAGCAT 148957 |||||| || ||||||||||| || Sbjct 197 GTTGCAGGCATCCTTGTACAGAAT 220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483200462842120