Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq326 82.4 5e-11 >seq326 Length=20000 Score = 82.4 bits (90), Expect = 5e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || |||||| || || || || ||||| |||| ||| || || | || |||| || Sbjct 12782 TGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGCGAGGGTACGACCATCTTCCAGCTGC 12841 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || || || ||||| ||||||||||| | || | |||||| || || ||| ||| Sbjct 12842 TTACCAGCGAAGATCAATCGCTGCTGATCAGGAGGAATACCTTCCTTATCCTGAATCTTC 12901 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 | || |||| ||| | ||||||| || || || |||| ||||| || || || || Sbjct 12902 -GATTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTTCCAGT 12960 Query 33726 TAACGTTTTTACAA 33739 || || || |||| Sbjct 12961 CAAAGTCTTGACAA 12974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328557926304960