Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq326 122 2e-22 >seq326 Length=20000 Score = 122 bits (134), Expect = 2e-22 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || || || || ||||| |||||||| ||| ||| || Sbjct 12753 CAGATCTTCGTCAAGACTTTGACTGGCAAGACTATCACATTGGAAGTCGAATCTTCGGAT 12694 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| |||| |||||| ||||||||||| || ||||| ||| || ||| || Sbjct 12693 ACAATCGATAATGTAAAGGCTAAGATTCAAGACAAGGAAGGCATTCCCCCTGACCAGCAG 12634 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 |||| ||||| || || |||||| | || ||||| | ||||||||||| |||||| | Sbjct 12633 CGACTCATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGAACTTTGGCCGACTACAACATT 12574 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 ||||| ||||||||||| || Sbjct 12573 CAGAAGGAGTCTACTCTGCA 12554 Score = 93.3 bits (102), Expect = 1e-13 Identities = 142/201 (71%), Gaps = 1/201 (0%) Strand=Plus/Minus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| ||| || | || ||||| || ||||| |||||||| ||| | |||| || | Sbjct 12520 TTTTGTCAAGACCTTGACTGGAAAGACTATCACCTTGGAAGTCGAATCTGCTGATACCAT 12461 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 ||| | || || |||||||| || || || ||||| || ||| ||| |||| Sbjct 12460 CGACACTGTCAAATCCAAGATTCAGGATAAGGAGGGAATCCCTCCCGACCAGCAACGACT 12401 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 ||| || |||||||||||| | ||||| || | || || ||| |||||| ||||||| Sbjct 12400 TATTTTTGCCGGAAAGCAGCTAGAAGACGGCCGCACGCTGAGCGACTACAACATCCAGAA 12341 Query 206358 AGAGTCTACTCTTCACCTTGT 206378 || |||| | || || || Sbjct 12340 GGAAAGTACTTTGCATCTCGT 12320 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 |||||||| || || ||||| ||| || || || || | |||||||| || ||| Sbjct 12900 AAGATTCAGGATAAGGAAGGTATTCCTCCTGATCAGCAGCGATTGATCTTCGCTGGTAAG 12841 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||||||||| | || | ||||| ||||| ||||||| || || ||||||||| Sbjct 12840 CAGCTGGAAGATGGTCGTACCCTCGCCGACTACAATATCCAGAAGGAATCCACTCTTCAC 12781 Query 206374 CTTGT 206378 ||||| Sbjct 12780 CTTGT 12776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181268674373423