Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq752 194 2e-44 seq326 93.3 4e-14 seq26 89.7 5e-13 >seq752 Length=11106 Score = 194 bits (214), Expect = 2e-44 Identities = 966/1510 (64%), Gaps = 55/1510 (4%) Strand=Plus/Plus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 ||||| || || || || || |||| ||||| | | || | ||| ||| | ||| Sbjct 4109 TTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGC 4168 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 ||||| ||||||| || || | ||||| | || | |||||| |||||| || | | Sbjct 4169 TCAAAGCACTCATTGTTACCCAGAATTTGCGAGGTCGATGCGGTGGGCATGGGAGCGAGC 4228 Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCAC 147072 | ||| || || || | ||||| | | ||| | ||||||| | | | ||| ||||| Sbjct 4229 AGCAACGAGTTGCGAATACCGTGCTCCTTGATCTGCTCCTTCAGACTGTCCCACTCCCAT 4288 Query 147073 ATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCT--CGACTGGCGGGAC 147130 | | || ||| | || |||||||||||| | || || | ||| ||| ||||||| Sbjct 4289 AACTCAGAAGGCTTGACATTCCACATGTCGAATTGAAGAATACCTTCCGA--GGCGGGAG 4346 Query 147131 TGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCG-CCAATTCACAGCTTGCCTCG-AG 147188 ||| ||| |||| |||| || | || || | ||| ||| || | || || Sbjct 4347 AGCCCTTGAAGGTAGAGTAGGGGCCTT-GCTCTTTGGCCAGCTCA-AGAGAGGCTGTCAG 4404 Query 147189 CGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGG--ACGGTCGCTTCTTCGCTC 147246 || | | ||| ||||| ||| ||| || ||||| || |||| || || | Sbjct 4405 GGCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTCACGG--GCCTCGGGAGAC 4462 Query 147247 TCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATA 147306 ||| | ||||| |||||| | ||| || || || | |||||| | ||| || ||||| Sbjct 4463 TCGAAGGGCATGCGCAGAGCAAGAAAAGCGTCAGCAAGACCCTGAACACCAACACCGATG 4522 Query 147307 GGTCGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCT--ATGGGATAGTGGTTGCGATCAA 147364 |||||||| ||||||| | || || || ||||| || |||||| |||| Sbjct 4523 GGTCGATGTCGCATGTTGCTGT--TGCGAGCCTCCTCAATGGGGTAATGGTTGACGTCAA 4580 Query 147365 TAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCAT 147424 | ||||||||||||||||| || || |||| ||| | | ||| |||| ||| || | Sbjct 4581 TGATCTTGTTGAGGTTACGGACGACCACTTGAGTGACCTCGTGGAGCTTCTGGAAGTCGT 4640 Query 147425 AAGTCCCGTCTTCG----ACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAG 147480 | || |||| | ||| | ||| || || ||| | ||| |||| ||||| Sbjct 4641 AGCGGCCTTCTTTGTAGTCGACGAAGGCA--GG--CAGGGCAAGAGAGGCCAAGTTGCAA 4696 Query 147481 ACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTT 147540 || || ||| || | | | | ||||| | ||| || | |||||||||| || Sbjct 4697 ACAGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAGGTTGGAGCTGCGA 4756 Query 147541 ATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTAC 147600 ||| ||||| || | ||| ||||| || | ||||| || || ||| | ||||| | Sbjct 4757 ATGGTTCCCAGGTTCTTCTGGTTGCTCTTTCTGTTGCAGGCATCCTTGTACAGCATAAAG 4816 Query 147601 GGTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTATGCAGGTCCTGCGCTCGCACC 147660 || ||| || ||| || | || | ||| | || | ||| || || | Sbjct 4817 GGGTTGCCCGTTTCGGTCTGGGACTCGAGGATGGAGTACCAGAGCTTCTGGGCACGAATA 4876 Query 147661 CGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCG 147720 || || |||||||| || ||| ||||| | |||||| || ||||| Sbjct 4877 GTCTTGCGGCCACGGCCCTCACGCTCATACTTTTCGTAGAGAGCCTCAAATTCCTCGCCA 4936 Query 147721 TAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCG 147780 |||||||| || ||||| || |||| | |||||||| || | ||| ||| | Sbjct 4937 TAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGGGTCCAATCCCCGTTCTTT 4996 Query 147781 TTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCG----CGC 147836 | ||||| ||| || ||||| || | |||||| || | || ||||| || Sbjct 4997 TCGACGCGCTTCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGA 5056 Query 147837 TTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAATTAAGCACGCTATAGATGTCGGCGTG 147896 ||| | |||| || | || || ||||| ||| | | | | ||| ||||| Sbjct 5057 TTTTC-TTCCTTACCGTGGTTCTTTCG---CAAATCAAGAAAGTCGAACACGTCTGCGTG 5112 Query 147897 CCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTCGACATG 147953 ||| || || | ||||| ||| | ||||| ||| || ||||||||||| || | Sbjct 5113 CCAAGGCTCGAGGTAGATGGCAAATGCACCAGGTCGCTTGTTACCGCCCTGGTCAACGTA 5172 Query 147954 GCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGT 148013 | | ||||||| || ||||| | |||||| | |||| | | || |||||||| Sbjct 5173 TCTGGCAGTGTTGTTGAAGACGCGAAGCATGGGAATGATGCCGTTGGATGTACCGTTGGT 5232 Query 148014 GGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCC-GC 148072 | || | |||| || || | ||| ||||| | ||| || || || || Sbjct 5233 GCCGGCAATGTAAGAGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGATTCCACCAGC 5292 Query 148073 CGTACTTTGA---TATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGATGCTGT 148129 | | ||| || |||||| | | | | |||| ||||||||| || ||||||| Sbjct 5293 CAT-CTTGGAGATCATGGCACAGGTCTTG-AGAGTGTC--GTAGATGCCATCAATGCTGT 5348 Query 148130 CGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATC---CGCGTTCCCGCCG 148186 ||| || | | | | | ||||| ||| ||| || || | | || || || Sbjct 5349 CGTCCTTCATGTCGACTAGGAAACAGGAAGACA---GCTGACACTGGGGGGTACCAGCGT 5405 Query 148187 AGAAAAGGGTGGGACTCGCGTGCGTAAACAATTT--TTGACTCATCATGCGATACGTCTC 148244 ||| || || || ||||| || || | || | || ||| | | | || ||||| Sbjct 5406 TGAAGAGTGTAGGTGAGGCGTGGGTGAAGAGCTTGCTGGA--CATGAGGTGGTAGGTCTC 5463 Query 148245 AATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTG 148304 | | || || || | ||| || ||| || | ||| |||||||| | ||||||||| Sbjct 5464 CAAAACGCGCTCAATATTGTCTCCCCAAATACCGACCGCAACGCGCATAATCATGTGCTG 5523 Query 148305 TGGTCGTTCGGCAA-CTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGT 148363 ||||| ||| ||| |||| ||||| |||||||||||| | || || || ||| Sbjct 5524 GGGTCGCTCGACAATCTTG-CCGTTGAGTTTGAGAAGATATGATCTCTCCAGAGTCTTGA 5582 Query 148364 AACCAAAGTA 148373 | |||||||| Sbjct 5583 AGCCAAAGTA 5592 >seq326 Length=20000 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| |||| |||||||| | | ||||| || ||||||||||||||| || || Sbjct 12536 CGCAGACGCAGGACCAAATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCCAAAGTT 12595 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || ||| |||||||| ||||| | | |||| || ||||| || || || || |||||| Sbjct 12596 CGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGAATGCCT 12655 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || || || ||| || || | | || | ||||| | | || ||||| | Sbjct 12656 TCCTTGTCTTGAATCTTAGCCTTTACATTATCGATTGTATCCGAAGATTCGACTTCCAAT 12715 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || ||||||| ||| || | ||| |||||||| Sbjct 12716 GTGATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 12756 >seq26 Length=47302 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||||| |||||||| | | | ||| || || ||||||||||||| || ||| Sbjct 11975 ACGCAGGCGCAGCACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCACAGGGT 12034 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| |||||||| ||||| | | |||| || || || || || || || ||||| Sbjct 12035 GCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCC 12094 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || || | | || | || |||| | |||||| || | Sbjct 12095 CTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAG 12154 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || || || || ||||| | |||||||||||| Sbjct 12155 GGTGATAGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT 12196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476393966572680