Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq39 84.2 3e-11 >seq39 Length=43498 Score = 84.2 bits (92), Expect = 3e-11 Identities = 181/270 (67%), Gaps = 8/270 (3%) Strand=Plus/Plus Query 147127 TGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGC 147186 ||||| ||||||| ||||||| | | || ||| | |||||| || | | | | Sbjct 5287 TGGCAGGGCGGCAACGCCATGAGGTGTAGATCCCGTGCGTTCCACGCACTCATGATGATC 5346 Query 147187 CGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGATAACCCACCTC----AGCTGGTCCAC 147242 |||||| | || || |||| |||| || || ||| || |||||||| || Sbjct 5347 CGCCTGTCGTACGGCTTGTTCTTGATCTTGTCAAT----CACGTCGGCGAGCTGGTCGAC 5402 Query 147243 GCCCTGGCCCCCGTAGTTTGTCCCGCAGTCCACGTACCTGGCCCCAAAGTGCCTCCACTG 147302 |||| ||| ||||| |||| | || |||||| || |||||||||| ||| || Sbjct 5403 TCCCTTGCCGGTGTAGTCTGTCTTGGCATCGACGTACTCTGCGCCAAAGTGCCGCCATTG 5462 Query 147303 GAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGAGAAGCCCGCCCGCTTGAG 147362 |||||||||||| || ||||| ||||| | | ||| | || ||| | ||| Sbjct 5463 GAAGCCGTACACGGGTCCCAGATCGCCTACTTCACGGTGTGTGAGACCCAGATTGTCGAG 5522 Query 147363 AAACTCGGGGGACCCGTGGGCGTCCCAGAT 147392 |||||| |||| || | | ||||||| || Sbjct 5523 GAACTCGCGGGATCCATTGCCGTCCCATAT 5552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583222053463200