Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq752 113 6e-19 seq31 86.0 9e-11 >seq752 Length=11106 Score = 113 bits (124), Expect = 6e-19 Identities = 209/304 (69%), Gaps = 2/304 (1%) Strand=Plus/Minus Query 259883 ACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGC 259941 |||||| | |||||| ||||| | | |||||| || | || || ||||| || || Sbjct 5460 ACCTACCACCTCATGTC-CAGCAAGCTCTTCACCCACGCCTCACCTACACTCTTCAACGC 5402 Query 259942 CGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGAT 260001 || || || | ||| || || || || || | |||||||||| ||| || Sbjct 5401 TGGTACCCCCCAGTGTCAGCTGTCTTCCTGTTTCCTAGTCGACATGAAGGACGACAGCAT 5342 Query 260002 CGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCAT 260061 || |||||||| ||||| |||||| || || | ||||||||| ||| || || || Sbjct 5341 TGATGGCATCTACGACACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGTGGAAT 5282 Query 260062 CGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCA 260121 ||| || || ||| | || || | ||| | ||| | || ||||||||||| Sbjct 5281 CGGCTTGAACGTCCACCGCATCCGTGCTACCGGCTCTTACATTGCCGGCACCAACGGTAC 5222 Query 260122 GTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCA 260181 ||||||||| | | |||||||||||||| || ||| |||| || | ||||| ||||| Sbjct 5221 ATCCAACGGCATCATTCCCATGCTTCGCGTCTTCAACAACACTGCCAGATACGTTGACCA 5162 Query 260182 GTGC 260185 | || Sbjct 5161 GGGC 5158 >seq31 Length=45476 Score = 86.0 bits (94), Expect = 9e-11 Identities = 221/329 (67%), Gaps = 6/329 (2%) Strand=Plus/Plus Query 1456448 GGTTTGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGT-CAACAAGCCGTCGAC 1456506 ||||||||| ||||||||||||||| | || || ||| || | |||| | | Sbjct 39774 GGTTTGCACACAGACTTTGCCTGTCTGTTGCACTCGCATCTCAAGCACCGAGCCAGCAAG 39833 Query 1456507 CGACGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGA 1456566 | | | ||| | | || ||| ||| || || | || ||| |||||||| | | ||| Sbjct 39834 CAAGTTATCCAGG-ATATTATCACCGACGCTGTTGGCATTGAGCAAGAGTTTTTGACCGA 39892 Query 1456567 GTCGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAAT 1456626 | | || ||| || ||| | ||||||||||||| | || ||| || || |||||| Sbjct 39893 GGCTCTTCCGTGTGCTCTCCTAGGCATGAACGCCA-CACTAATGAAGCAATATATTGAA- 39950 Query 1456627 TTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAA 1456686 ||||||||||| ||||| | | || || || | || ||| ||| || ||||| Sbjct 39951 TTTGTCGCCGATCGCCTATTGGTTGCTCTTGG-TAACGAAAAGGTATACAAAACCGCCAA 40009 Query 1456687 CCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCG 1456746 ||| ||| | ||||| || || | | |||||||| ||||| |||||| || Sbjct 40010 CCCCTTCGATTTCATGGAAAACATTTCCTTGGGTGGCAAGACAAACTTCTTCGAGAAGCG 40069 Query 1456747 CG-TGGCGAGTACGCCAAGGCCGGCGTCA 1456774 | ||| || || ||||| ||||||| Sbjct 40070 AGTTGGAGAATATCAAAAGGCTGGCGTCA 40098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7174294276631006