Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq26 134 1e-26 seq326 125 6e-24 seq433 102 7e-17 >seq26 Length=47302 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || ||||| | | || ||||||||| | || |||||||| || |||||||| ||| | Sbjct 11970 CCGCCACGCAGGCGCAGCACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCAC 12029 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || | || || ||||||||||| ||||| || | || |||||||||| ||| Sbjct 12030 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGA 12089 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | || |||||||||| |||||| ||| | |||| | | |||||| || ||||| Sbjct 12090 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAAGACTCCAC 12148 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | ||||| || || ||||| | ||||| || || |||||||| Sbjct 12149 CTCAAGGGTGATAGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT 12196 >seq326 Length=20000 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | | || |||||||| | ||| |||||| ||||||||||| |||||| Sbjct 12530 CCACCCCGCAGACGCAGGACCAAATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCC 12589 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || ||||| | || || ||||||||||| ||||| || | ||||||||||| | ||| Sbjct 12590 AAAGTTCGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGA 12649 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||| ||||| ||| | | | | | || || ||||| || Sbjct 12650 ATGCCTTCCTTGTCTTGAATCTTAGCCTTTACATTATCGATTGTATCCGAAGATTCGACT 12709 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || || || |||||||| || || || |||||||| Sbjct 12710 TCCAATGTGATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 12756 Score = 93.3 bits (102), Expect = 4e-14 Identities = 129/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || || ||||| ||||| | ||| || | || |||||||||||||| || || Sbjct 12794 TCCTTCTGGATATTGTAGTCGGCGAGGGTACGACCATCTTCCAGCTGCTTACCAGCGAAG 12853 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| |||||||| || | ||||| | ||||| ||| ||||| || | | | Sbjct 12854 ATCAATCGCTGCTGATCAGGAGGAATACCTTCCTTATCCTGAATCTTCGATTTGACATTG 12913 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | |||||| || || ||||| | ||||| || || || |||||||| || ||| Sbjct 12914 TCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTTCCAGTCAAAGTCTTGACA 12973 Query 35726 A 35726 | Sbjct 12974 A 12974 >seq433 Length=16792 Score = 102 bits (112), Expect = 7e-17 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||| ||||||||||| ||| || |||||| |||| || |||||||| || || || | Sbjct 4877 CCTTCTGAATGTTGTAGTCGCACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAAA 4936 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 |||| ||||||||||| | |||| || ||||||||| ||| || ||| | | | Sbjct 4937 TCAATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGCCTTGACATTGT 4996 Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAA 35726 | | |||||| || || ||||| | ||||| || || ||||||| || || || | Sbjct 4997 CGATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTAACGA 5056 Query 35727 A 35727 | Sbjct 5057 A 5057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450588133912040