Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq326 143 3e-29 seq433 116 4e-21 seq26 107 2e-18 >seq326 Length=20000 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| ||| || | |||||||| || || || ||||| || ||||||||||| || Sbjct 13059 CCACCTCGGAGGCGGAGGACGAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCA 13118 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || ||| || ||||| || || || || |||| ||||||||| ||||| || Sbjct 13119 AGAGTGCGACCGTCCTCAAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCGGGGGGG 13178 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || ||||| || ||||| ||| | || || ||||| || || Sbjct 13179 ATTCCCTCCTTATCCTGAATCTTCGACTTGACATTGTCAATGGTATCAGACGACTCGACC 13238 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||||||||| || ||||| | || || ||||| |||||||| Sbjct 13239 TCGAGAGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 13285 Score = 122 bits (134), Expect = 9e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || ||||| || ||||||||||| || || ||||||||| | Sbjct 12758 CCACCACGGAGGCGGAGTACAAGGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGCG 12817 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || || || ||||| || || || || ||||| ||||||||||| || || Sbjct 12818 AGGGTACGACCATCTTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGATCAGGAGGA 12877 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || || ||||| || |||||| ||| | |||||||| || || || Sbjct 12878 ATACCTTCCTTATCCTGAATCTTCGATTTGACATTGTCGATGGTGTCGGAGGACTCGACC 12937 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAAC 134701 || || || ||||| || || || ||||| || || Sbjct 12938 TCAAGGGTGATGGTCTTTCCAGTCAAAGTCTTGAC 12972 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTG 134569 || || || || ||||| |||||||||||||| ||||| | | | | || |||||||| Sbjct 12554 TGCAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCCAAAGTTCGGCCA-TCCTCGAGCTG 12612 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 || || ||||| || | |||||||| || || || |||||||| || |||||||| || Sbjct 12613 CTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGAATCTT 12672 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 || || || | ||| || || ||||| || || | || || || || || || Sbjct 12673 AGCCTTTACATTATCGATTGTATCCGAAGATTCGACTTCCAATGTGATAGTCTTGCCAGT 12732 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| || ||||| Sbjct 12733 CAAAGTCTTGACGAAGATCTGCAT 12756 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | |||||| || | || |||||| || ||||||||||||| | ||| | Sbjct 12311 AGACGAAGCACGAGATGCAAAGTACTTTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGG 12370 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| || || |||||||| | || ||||| ||||| || || || || Sbjct 12371 CCGTCTTCTAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCGGGAGGGATTCCCTCC 12430 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || |||||| | ||| | || || | ||||| || || | || Sbjct 12431 TTATCCTGAATCTTGGATTTGACAGTGTCGATGGTATCAGCAGATTCGACTTCCAAGGTG 12490 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || || || || || ||||||||||| Sbjct 12491 ATAGTCTTTCCAGTCAAGGTCTTGACAAAAATTTGCAT 12528 >seq433 Length=16792 Score = 116 bits (128), Expect = 4e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 |||| |||||||||||||||| | ||| || ||| || ||||| ||||| || |||| Sbjct 4877 CCTTCTGAATGTTGTAGTCGCACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAAA 4936 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 |||| |||||||| || || || ||||| || || ||||| ||||| ||||| || Sbjct 4937 TCAATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGCCTTGACATTGT 4996 Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 | | ||||| || || || || || || || ||||| || || || | || ||||||| Sbjct 4997 CGATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTAACGA 5056 Query 134704 AA 134705 || Sbjct 5057 AA 5058 >seq26 Length=47302 Score = 107 bits (118), Expect = 2e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| | || || ||| ||||| || ||||||||||||| | |||| | Sbjct 11979 AGGCGCAGCACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCACAGGGTGCGG 12038 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || |||||||| || || ||||| || | || ||||| || || || ||||| || Sbjct 12039 CCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCC 12098 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| ||| | |||||||| || ||||| || || || Sbjct 12099 TTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTG 12158 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || || || | ||||| |||||||| ||||| ||| Sbjct 12159 ATAGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCATCTTG 12200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505168045726760