Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq752 199 5e-46 >seq752 Length=11106 Score = 199 bits (220), Expect = 5e-46 Identities = 963/1524 (63%), Gaps = 42/1524 (3%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 || ||||| |||| || || | || |||||| || || ||||| || | | Sbjct 4118 TGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCAC 4177 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 ||||| || ||||||||||| | || ||||| || ||||| || || | || || Sbjct 4178 TCATTGTTACCCAGAATTTGCGAGGTCGATGCGGTGGGCATGGGAGCGAGCAGCAACGAG 4237 Query 68839 TTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGAT 68898 || | || ||| || |||| | || || ||| | ||| ||||| | ||||| Sbjct 4238 TTGCGAATACCGTGCTCCTTGATCTGCTCCTTCAGACTGTCCCACTCCCATAACTCAGAA 4297 Query 68899 GGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATAT 68958 || |||||||| | ||| |||| ||||| || | || || || || | Sbjct 4298 GGCTTGACATTCCACATGTCGAATTGAAGAATACCTTCCGAGGCGGGAGAGCCCTTGAAG 4357 Query 68959 GTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAA 69018 || || || |||| || || || || ||| | || | ||| ||| || Sbjct 4358 GTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCAAGAGAGGCTGTCAGGGCAGCGTGGTAG 4417 Query 69019 ATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGT 69078 || || ||||| |||| ||| ||||| || | || || || ||||| || | Sbjct 4418 ATGGTCTCGAAGATCTGCTTGTTGAGCTCACGGGCCTCGGGAGACTCGAAGGGCATGCGC 4477 Query 69079 AAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTA 69138 | | || ||| || || || | |||||||| |||| |||||| |||| ||||| | | Sbjct 4478 AGAGCAAGAAAAGCGTCAGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCATG 4537 Query 69139 TTTGAACTTTC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATT 69197 || | || | ||| || ||| || |||| || | || || || || || || || Sbjct 4538 TT-GCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACGTCAATGATCTTGTTGAGGTT 4596 Query 69198 TCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCATCTATA-- 69255 ||||| || |||| | || || | || || | || || | || || ||| | Sbjct 4597 ACGGACGACCACTTGAGTGACCTCGTGGAGCTTCTGGAAGTCGTAGCGGCCTTCTTTGTA 4656 Query 69256 ----ACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATT 69311 || || | ||| || | ||| || | || ||||| || ||||||| || Sbjct 4657 GTCGACGAAGGCAGGCAGGGCAAGAGAGGCCAAGTTGCAAACAGCAACCTCATCAGGG-- 4714 Query 69312 TGCA---TATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTG 69368 ||| || | || ||||| || || || || | || || ||||| || | Sbjct 4715 -GCACAGTACTCAATGATCTCCGTGCACAGGTTGGAGCTGCGAATGGTTCCCAGGTTCTT 4773 Query 69369 CTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAAT 69428 ||| || |||||| |||| ||||| |||||||| || ||||| || | || ||||| | Sbjct 4774 CTGGTTGCTCTTTCTGTTGCAGGCATCCTTGTACAGCATAAAGGGGTTGCCCGTTTCGGT 4833 Query 69429 CTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTA---ACG 69485 ||| || |||| || || | ||| | | ||| || |||||| ||| Sbjct 4834 CTGGGACTCGAGGATGGAGTACCAGAGCTTCTGGGCACGAATA---GTCTTGCGGCCACG 4890 Query 69486 CTTCTCTTTTTCATATTGT--GTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCC 69543 ||| ||||| | | ||| | |||| || ||||| || || | |||| || Sbjct 4891 GCCCTCACGCTCATACTTTTCGTAGAGAGCC--TCAAATTCCTCGCCATAGCAATCAGCC 4948 Query 69544 AATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTA---ACTCGT 69600 | ||||| || || || |||||||| | | ||| ||| | | ||| || || Sbjct 4949 AGGCCAGGGCACTCGTTGGGACACATGAGGGTCCA---ATCCCCGTTCTTTTCGACGCGC 5005 Query 69601 TTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCA 69660 ||||| || ||||| || ||||| ||||| | ||||| || | | | ||||||||| Sbjct 5006 TTCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGATTTTCTTCC 5065 Query 69661 TTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGA 69720 || || || ||| | ||| ||||| || | | || | ||||| || || || Sbjct 5066 TTACCGTGGTTCTTTCGCAAATCAAGAAAGTCGAACACGTCTGCGTGCCAAGGCTCGAGG 5125 Query 69721 TATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTA 69780 || || || | | || ||||| || || || ||||| || | ||||||||||||||| Sbjct 5126 TAGATGGCAAATGCACCAGGTCGCTTGTTACCGCCCTGGTCAACGTATCTGGCAGTGTTG 5185 Query 69781 TTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAA 69840 || |||| | ||||| ||||| || || || ||| |||| || || || | ||| ||| Sbjct 5186 TTGAAGACGCGAAGCATGGGAATGATGCCGTTGGATGTACCGTTGGTGCCGGCAATGTAA 5245 Query 69841 CTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATT 69900 || | || || || | | || ||||| || ||||| || ||||| Sbjct 5246 GAGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGATTCCACCAGCCATCTTGGAGATC 5305 Query 69901 AGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGA 69960 | ||||| || | ||||| || || || || ||||| || || |||||| | Sbjct 5306 ATGGCACAGGTCTTGAGAGTGTCGTAGATGCCATCAATGCTGTCGTCCTTCATGTCGACT 5365 Query 69961 AGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCG 70020 || |||||| ||||| ||| || || || || || || | |||||| || ||| Sbjct 5366 AGGAAACAGGAAGACAGCTGACACTGGGGGGTACCAGCGTTGAAGAGTGTAGGTGAGGCG 5425 Query 70021 TGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATAT----- 70075 || ||||| || || | || | ||| || || | | | || |||| Sbjct 5426 TGGGTGAAGAGCTTGCTGGACATGAGGTGGTAGGTCTCCAAAACGCGCTCAATATTGTCT 5485 Query 70076 -CCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTT 70134 |||| ||| || | ||| || ||||| | ||| ||||| ||||| || || | Sbjct 5486 CCCCA------AATACCGACCGCAACGCGCATAATCATGTGCTGGGGTCGCTCGACAATC 5539 Query 70135 TTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTAT 70194 || || | ||| | || |||||| | |||||||| || || ||||| || | || Sbjct 5540 TTGCCGTTGAGTTTGAGAAGATATGATCTCTCCAGAGTCTTGAAGCCAAAGTATTGATAG 5599 Query 70195 GAAAAGTCTCTTTCGTAAATAATA 70218 |||||||| ||||| | |||| Sbjct 5600 TTGAAGTCTCTGTCGTAGACAATA 5623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686595715555320