Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_027344.1 Length=158099 Score E Sequences producing significant alignments: (Bits) Value seq20645 107 2e-18 >seq20645 Length=266 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 15086 ACCGGCGTTGATGCCTATACCAGCTCGCTTGCTGATATACTTAATAATAC-TGTTACTTG 15144 |||||||||||| || |||||||| || | ||| | || || | ||| || | || Sbjct 34 ACCGGCGTTGATACCGATACCAGCGCGTTGGCTCACGTATTTTACGATAGATGATGCTGT 93 Query 15145 CTGCATTAATAGAATTCAGTGAATCGCCAGCTTCAATAACTACACAAGAACTAAACTGAC 15204 | || || || |||| || ||||||| |||||| | ||| || || |||||||||| Sbjct 94 C-GCGTTGATGGAATCCAAGCTATCGCCACATTCAATCAGTACGCATGAGCTAAACTGAC 152 Query 15205 GAGTAGGAGTACGAGCCCCTGCCATAATCGGTGTAGGCAATGAAATCTGTCGAGTAGATA 15264 |||| || ||||| | || ||||| || || || |||| |||||||| ||| |||| Sbjct 153 GAGTCGGCGTACGCACTCCCGCCATGATAGGCGTTGGCAGTGAAATCTTAAAAGTCGATA 212 Query 15265 CAGCGTCATAAAA 15277 | ||||| ||||| Sbjct 213 CCGCGTCGTAAAA 225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505558267787320