Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq752 91.5 1e-13 seq326 91.5 1e-13 >seq752 Length=11106 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/231 (69%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 130763 TGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGGAT 130822 || || |||||||||| ||| || | |||||||||| |||| | || |||||| | Sbjct 4118 TGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCAC 4177 Query 130823 TCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAGAA 130882 || ||||| || | ||||| | || | ||||||||||||| || | | | || Sbjct 4178 TCATTGTTACCCAGAATTTGCGAGGTCGATGCGGTGGGCATGGGAGCGAGCAGCAACGAG 4237 Query 130883 TTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAGGTA 130942 || |||| ||||||| | |||| | ||||| ||||| ||||||| | | Sbjct 4238 TTGCGAATACCGTGCTCCTTGATCTGCTCCTTCAGACTGTCCCACTCCCATAACTCAGAA 4297 Query 130943 GGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGA 130993 || |||||| |||||||| || ||||| || || |||| ||||||| Sbjct 4298 GGCTTGACA---TTCCACATGTCGAATTGAAGAATACCTTCCGAGGCGGGA 4345 >seq326 Length=20000 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | || | ||| || ||| || || || || |||||||||||| Sbjct 12302 CCACCACGCAGACGAAGCACGAGATGCAAAGTACTTTCCTTCTGGATGTTGTAGTCGCTC 12361 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| ||||||| ||||| || ||||| |||| || || || || || || || Sbjct 12362 AGCGTGCGGCCGTCTTCTAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCGGGAGGG 12421 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| ||||| |||||| ||| | || || | || || | | ||| ||| Sbjct 12422 ATTCCCTCCTTATCCTGAATCTTGGATTTGACAGTGTCGATGGTATCAGCAGATTCGACT 12481 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | || |||| || || |||| || || ||||| ||||||||| Sbjct 12482 TCCAAGGTGATAGTCTTTCCAGTCAAGGTCTTGACAAAAATTTGCATA 12529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424745562206856