Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq31 98.7 3e-15 >seq31 Length=45476 Score = 98.7 bits (108), Expect = 3e-15 Identities = 124/169 (73%), Gaps = 1/169 (1%) Strand=Plus/Plus Query 443696 CAGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAG 443755 |||||| | | |||| | || ||||| |||| || || || | || || ||||| Sbjct 39632 CAGCTTTGCCCAGCGCTTGGTGGCTTTCGCTGCTGTGGAGGGCATCTTCTTCAGCGGTGC 39691 Query 443756 CTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTA 443815 |||| ||||| || |||||| | || |||||||| || |||| ||||| ||||| || Sbjct 39692 CTTT-GCCTCGATTTTCTGGCTCAAGAAGCGTGGTCTGATGCCAGGTCTCACCTTCTCTA 39750 Query 443816 ACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCT 443864 ||||||| ||| || || ||||||||||| ||||| |||||||| Sbjct 39751 ACGAACTTATCTCCCGTGATGAGGGTTTGCACACAGACTTTGCCTGTCT 39799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1587593957713035