Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq752 282 5e-71 seq31 100 4e-16 >seq752 Length=11106 Score = 282 bits (312), Expect = 5e-71 Identities = 1168/1808 (65%), Gaps = 51/1808 (3%) Strand=Plus/Plus Query 110369 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATA-TGCATAGAAGAGAGCTT 110427 |||||||| || |||||||| || ||||| || || | |||||||| | || ||| Sbjct 3809 TAGTACATGCCCGTCTTGAGACCCAACTTCCA-GCCAGCAAAGTGCATAGAGGTGATCTT 3867 Query 110428 GGACATCGTTGGACTTTCCATGAAGAGGTTCAT--ACTTTGACTTTGGTCAATGAAGCGC 110485 | ||| || ||| | |||| | ||| | ||| |||| |||| || ||| Sbjct 3868 GCCCATAGTAGGATCCTTCATGTGAACGTTGAGCGACTGGGACT--GGTCGATAAAGGCA 3925 Query 110486 CCCCGTTGTGCCGCCATATCAATGACATCCTTCATCTTAATTTCCCAAACTGTGCGATAG 110545 || || | || ||||| | || |||| | ||| |||||||| || |||| Sbjct 3926 CCGCGATCGGCGGCCATCTGGATAACATGACGCTGAGAAATCTCCCAAACAGTCTTATAG 3985 Query 110546 AGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACC 110605 ||| |||||| || | ||||||| | ||| ||||| |||||||| | | | Sbjct 3986 AGAGCCTTGATGTCGGCGGGGATATTGGGGATGTTCTGAATGGAACCATTCTCGGCAATG 4045 Query 110606 ATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGC 110665 ||| | | |||||| | | ||||||||||| || | ||| || |||| ||| Sbjct 4046 ATGCGGTTCTTCATGGCATCAGACCAGAGACCCATGTCGACGAGATCCTTGAGGAGCCAG 4105 Query 110666 TTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTAT 110725 |||||| | || ||||| || | | | | | |||| ||||| | |||||| Sbjct 4106 GGGTTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTAT 4165 Query 110726 GGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCC 110785 || |||||||| ||||| ||||||| ||||| | ||| || || || ||||| || || Sbjct 4166 GGCTCAAAGCACTCATTGTTACCCAGAATTTGCGAGGTCGATGCGGTGGGCATGGGAGCG 4225 Query 110786 ATCA--AAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGT 110843 | || || || ||| |||| ||| | ||||||||| | ||||| ||| ||||| | Sbjct 4226 AGCAGCAACGA--GTTGCGAATACCGTGCTCCTTGATCTGCTCCTTCAGACTGTCCCACT 4283 Query 110844 CG--TAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGC 110901 | || | || || || || |||| ||||||| || ||||| | |||| || || Sbjct 4284 CCCATAACTCAGAA-GGCTTGACATTCC-ACATGTCGAATTGAAGAATACCTTCCGAGGC 4341 Query 110902 GGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTC 110961 |||||| |||| ||||| |||| ||||| ||| |||| ||| || | || Sbjct 4342 GGGAGAGCCCTTGAAGGTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCA-AGAGAGGCTG 4400 Query 110962 -CAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTG 111020 ||||| ||||| || ||||| || ||||| | || | ||| ||| || | Sbjct 4401 TCAGGGCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTCACGGGCCTCGGGAG 4460 Query 111021 AATCAAATGCGTAGCGGCACAA-AATAAATACATCCGCGAGACCTTGAACACCCAAACCA 111079 | || || | ||| || | || ||| | || || ||||| |||||||| | ||| Sbjct 4461 ACTCGAAGGGCATGCG-CAGAGCAAGAAAAGCGTCAGCAAGACCCTGAACACCAACACCG 4519 Query 111080 ATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCA 111139 || |||| |||||||| || || || || ||||| ||| ||| || |||| Sbjct 4520 ATGGGTCGATGTCGCATGTTGCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACGTCA 4579 Query 111140 ATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCA 111199 |||| ||| || || | || | | |||| || || || || | | || Sbjct 4580 ATGATCTTGTTGAGGTTACGGACGACCACTTGAGTGACCTCGTGGAGCTTCTGGAAGTCG 4639 Query 111200 AAAGTGCGAGTCTCTTCATT-GACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAAC 111258 | || ||| | | | ||| | || ||||| | || ||||| |||||||| Sbjct 4640 TAGCGGCCT-TCTTTGTAGTCGACGAAGGCAGGCAGGGCAAGAGAGGCCAAGTTGCAAAC 4698 Query 111259 AGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAAT 111318 ||| |||||| | |||||| | || || || || | |||||| || ||| Sbjct 4699 AGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAGGTTGGAGCTGCGAAT 4758 Query 111319 CGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGG 111378 || |||| ||||| ||||| ||||| ||||||| ||||||||||| ||||| |||| Sbjct 4759 GGTTCCCAGGTTCTTCTGGTTGCTCTTTCTGTTGCAGGCATCCTTGTACAGCATAAAGGG 4818 Query 111379 CGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTACAA 111437 | ||||| || ||||| || | ||| || | | ||| | | || | ||| | || Sbjct 4819 GTTGCCCGTTTCGGTCTGGGACTCGAGGATGGAGTACCAGAGCTTCTG-GGCACG---AA 4874 Query 111438 TGGCGTT--GGCC-CGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCAC 111494 | | || |||| || ||||| ||| |||||| |||||| || ||||| ||||| Sbjct 4875 TAGTCTTGCGGCCACGGCCCTCACGCTCATACTTTTCGTAGAGAGCCTCAAATTCCTC-G 4933 Query 111495 CCACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCT 111553 ||| || || | || || || || || ||||| | || | ||| | || | | Sbjct 4934 CCATAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGGGTCCAAT--CCCCGT 4991 Query 111554 TC--CTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTAC 111611 || || || ||||||||||| || ||||| |||||||| | ||||| || | | Sbjct 4992 TCTTTTCGACGCGCTTCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAG 5051 Query 111612 ACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGT 111671 ||| ||||| | ||| ||||| ||| || ||||| || || | | || |||| Sbjct 5052 CACGATTTTCTTCCTTACCGTGGTTCTTTCGCAAATCAAGAAAGTCGAACACGTCTGCGT 5111 Query 111672 GCCATGGCTCAAGATAG------ACTGCGATAGATCCCTT-TCGACGCCCAGCTTGATTT 111724 |||| ||||| || ||| | ||| || || ||| | ||||| || | Sbjct 5112 GCCAAGGCTCGAGGTAGATGGCAAATGCACCAGGTCGCTTGTTACCGCCC----TGGTCA 5167 Query 111725 ACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCA 111784 || || | || ||| ||| || ||||||||||| ||||| || || | ||| ||| Sbjct 5168 ACGTATCTGGCAGTGTTGTTGAAGACGCGAAGCATGGGAATGATGCCGTTGGATGTACCG 5227 Query 111785 TTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCC 111844 || || || ||| ||| | || | | |||| || || || || || Sbjct 5228 TTGGTGCCGGCAATGTAAGAGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGATTCCA 5287 Query 111845 CCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAG 111904 |||||| ||| ||||| ||||| | | ||||| | ||||| || | || | Sbjct 5288 CCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATGCCATCAATGCTG 5347 Query 111905 TCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTG 111964 || ||||| || ||| ||||| || |||| ||| || |||||||| ||| Sbjct 5348 TCGTCCTTCATGTCGACTAGGAAACAGGAAGACAGCTGACACTGGGGGGTACCAGCGTTG 5407 Query 111965 AAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCA 112022 ||||| || |||| ||||| ||| | | |||| |||||| || ||| ||||||| Sbjct 5408 AAGAGTGTAGGTGAGGCGTGGGTGA--AGAGCTTGCTGGACATGAGGTGGTAGGTCTCCA 5465 Query 112023 AGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTG 112082 | || ||||| | || || || |||| || || ||||| | ||||| ||| | Sbjct 5466 AAACGCGCTCAATATTGTCTCCCCAAATACCGACCGCAACGCGCATAATCATGTGCTGGG 5525 Query 112083 GGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTCTTCTCAAGGGTTTTGAGA 112141 | || | | |||| | ||| ||||||| | || |||| || || |||| Sbjct 5526 GTCGCTCGACAATCTTGCCGTTGAGTTTGAGAAGATATGATC-TCTCCAGAGTCTTGAAG 5584 Query 112142 CCAAAGTA 112149 |||||||| Sbjct 5585 CCAAAGTA 5592 >seq31 Length=45476 Score = 100 bits (110), Expect = 4e-16 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || ||| | ||||||||| ||||| |||||||| || |||||| ||||| Sbjct 39794 GGCAAAGTCTGTGTGCAAACCCTCATCACGGGAGATAAGTTCGTTAGAGAAGGTGAGACC 39735 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 |||||| ||||| |||||||| | ||| |||| | | || | ||| ||||||||| Sbjct 39734 TGGCATCAGACCACGCTTCTTGAGCCAGAAAATCGAGGCAAAGGCACCGCTGAAGAAGAT 39675 Query 122778 ACCCTCCACA 122787 ||||||||| Sbjct 39674 GCCCTCCACA 39665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627745750864800