Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq752 325 5e-84 seq31 113 6e-20 seq9 93.3 5e-14 >seq752 Length=11106 Score = 325 bits (360), Expect = 5e-84 Identities = 1142/1768 (65%), Gaps = 25/1768 (1%) Strand=Plus/Plus Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864 ||||||| |||||| || |||| | || | ||||||||| ||||||||||| | Sbjct 3771 TGAACTGGATGGGTGCAGCAGCAGCCTGCGTGCGCAAGTAGTACATGCCCGTCTTGAGAC 3830 Query 117865 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGA 117924 || ||||||| || | ||||| |||| | |||| | || ||| | |||| Sbjct 3831 CCAACTTCCAGCCAGCAAAGTGCATAGAGGTGATCTTGCCCATAGTAGGATCCTTCATGT 3890 Query 117925 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 117984 | ||| | ||||| || ||||| ||| || ||||| || ||||| | || | Sbjct 3891 GAACGTTGAGCGACTGGGACTGGTCGATAAAGGCACCGCGATCGGCGGCCATCTGGATAA 3950 Query 117985 CATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATAT 118044 ||| | || ||||| |||||| | ||||| ||| || || | ||||||| Sbjct 3951 CATGACGCTGAGAAATCTCCCAAACAGTCTTATAGAGAGCCTTGATGTCGGCGGGGATAT 4010 Query 118045 CCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTTCATATCCTTTGACC 118104 ||| || || ||||| ||| | | | ||| | | |||||| | | |||| Sbjct 4011 TGGGGATGTTCTGAATGGAACCATTCTCGGCAATGATGCGGTTCTTCATGGCATCAGACC 4070 Query 118105 AGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCACCCG 118164 ||||||| || | |||||||| | ||| ||||| || || ||||| | Sbjct 4071 AGAGACCCATGTCGACGAGATCCTTGAGGAGCCAGGGGTTGACGACCTGGAATTCACCAG 4130 Query 118165 CGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCA 118224 | | | || | | | || || |||| |||||||||||||||||||||||||||||||| Sbjct 4131 CCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCACTCATTGTTACCCA 4190 Query 118225 AGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCT 118284 ||||| | || || || ||||||||||| || | || | ||| || | ||| | Sbjct 4191 GAATTTGCGAGGTCGATGCGGTGGGCATGGGAGCGAGCAGCAACGAGTTGCGAATACCGT 4250 Query 118285 TTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCG--TAGTTGAGCTTTGTCTCCCCCTG 118342 ||| | || | ||||| ||| |||||| || || | || | || | | Sbjct 4251 GCTCCTTGATCTGCTCCTTCAGACTGTCCCACTCCCATAACTCAGAA--GGCTTGACATT 4308 Query 118343 CCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGG 118402 |||||| || || || || ||||||| || || || || |||| || || || || Sbjct 4309 CCACATGTCGAATTGAAGAATACCTTCCGAGGCGGGAGAGCCCTTGAAGGTAGAGTAGGG 4368 Query 118403 GCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCG-AGGGCTGCGTGATACATTGTTTCAA 118461 ||| | | | |||| || || | || ||||| ||||| || || || || | Sbjct 4369 GCCTTGCTCTTTGGCCAGCTCA-AGAGAGGCTGTCAGGGCAGCGTGGTAGATGGTCTCGA 4427 Query 118462 AAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAA-AATA 118520 | || | || | | ||||||| || || || | | || || | || | Sbjct 4428 AGATCTGCTTGTTGAGCTCACGGGCCTCGGGAGACTCGAAGGGCATGCG-CAGAGCAAGA 4486 Query 118521 AATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTC 118580 || | || || ||||| || ||||| | || || || ||||||| ||| || || Sbjct 4487 AAAGCGTCAGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCATGTTGCTGTTG 4546 Query 118581 CGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACA 118640 ||||| ||| | ||| ||| || || || | | | || || || | ||| Sbjct 4547 CGAGCCTCCTCAATGGGGTAATGGTTGACGTCAATGATCTTGTTGAGGTTACGGACGACC 4606 Query 118641 ACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATT-GACATA 118699 || | |||| || || ||||| | | | || | | || ||| | | | ||| | Sbjct 4607 ACTTGAGTGACCTCGTGGAGCTTCTGGAAGTCGTAGCGGCCT-TCTTTGTAGTCGACGAA 4665 Query 118700 CTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTC 118759 ||| ||||| | || |||| || || |||| |||||| || |||||| Sbjct 4666 GGCAGGCAGGGCAAGAGAGGCCAAGTTGCAAACAGCAACCTCATCAGGGGCACAGTACTC 4725 Query 118760 TATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTT 118819 || || |||||||||| ||| || || |||||| |||| |||||| || || ||| Sbjct 4726 AATGATCTCCGTGCACAGGTTGGAGCTGCGAATGGTTCCCAGGTTCTTCTGGTTGCTCTT 4785 Query 118820 TGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAG 118879 | |||| || ||||||||||| ||||| | || | ||||| || || ||||||| ||| Sbjct 4786 TCTGTTGCAGGCATCCTTGTACAGCATAAAGGGGTTGCCCGTTTCGGTCTGGGACTCGAG 4845 Query 118880 AATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGT 118938 || | | ||||| | || | || | | ||| | | | || ||||| ||| | Sbjct 4846 GATGGAGTACCAGAGCTTCTGG-GCACGAATAGTCTTGCGGCCACGGCCCTCACGCTCAT 4904 Query 118939 ACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTAT 118998 ||||| |||||| || ||||| || || || | || | || || || || | Sbjct 4905 ACTTTTCGTAGAGAGCCTCAAATTCCTCGCCATAGCAATCAGCCAGGCCAGGGCACTCGT 4964 Query 118999 CTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGA 119058 || || | ||| | ||| | || || || || |||||||||||||| ||||||| Sbjct 4965 TGGGACACATGAGGGTCCAATCCCCGTTCTTTTCGACGCGCTTCATGAAGAGATCTGGGA 5024 Query 119059 TCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCA 119118 |||| || || |||||| || ||| ||| |||||| | || || || |||| Sbjct 5025 TCCACAGAGCAAGGAAGAGGTCGCGAGCACGATTTTCTTCCTTACCGTGGTTCTTTCGCA 5084 Query 119119 ACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCT 119178 | || | |||||| | | || |||||||| || || ||||| | || | || || Sbjct 5085 AATCAAGAAAGTCGAACACGTCTGCGTGCCAAGGCTCGAGGTAGATGGCAAATGCACC-- 5142 Query 119179 TACGACG------ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCA 119232 | | || ||| |||||| || || || |||||| ||| || || ||||||| Sbjct 5143 -AGGTCGCTTGTTACCGCCCTGGTCAACGTATCTGGCAGTGTTGTTGAAGACGCGAAGCA 5201 Query 119233 TTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGA 119292 | |||||||| || | |||| || || || || ||| ||| | || | || Sbjct 5202 TGGGAATGATGCCGTTGGATGTACCGTTGGTGCCGGCAATGTAAGAGCCGGTAGCACGGA 5261 Query 119293 CATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGA 119352 ||||| || || || || || || ||| ||| ||||| || || | ||| Sbjct 5262 TGCGGTGGACGTTCAAGCCGATTCCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGA 5321 Query 119353 GACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACA 119412 || || ||||||| ||||| || ||| |||| | ||| ||||| ||| |||| Sbjct 5322 GAGTGTCGTAGATGCCATCAATGCTGTCGTCCTTCATGTCGACTAGGAAACAGGAAGACA 5381 Query 119413 TTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTT 119472 ||| | ||| ||||||||||||||||| || |||| |||||| ||| | | ||| Sbjct 5382 GCTGACACTGGGGGGTACCAGCGTTGAAGAGTGTAGGTGAGGCGTGGGTGA--AGAGCTT 5439 Query 119473 G--GGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGAT 119530 | |||||| || |||||||||||| ||| ||| | || || |||||||| Sbjct 5440 GCTGGACATGAGGTGGTAGGTCTCCAAAACGCGCTCAATATTGTCTCCCCAAATACCGAC 5499 Query 119531 CGAGACCCGCATAAACATGTATTGGGGT 119558 || || ||||||| ||||| |||||| Sbjct 5500 CGCAACGCGCATAATCATGTGCTGGGGT 5527 >seq31 Length=45476 Score = 113 bits (124), Expect = 6e-20 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || ||| | |||||| ||||||||||| ||||| || |||||| ||||| Sbjct 39794 GGCAAAGTCTGTGTGCAAACCCTCATCACGGGAGATAAGTTCGTTAGAGAAGGTGAGACC 39735 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 |||||| ||||| |||||||| | ||||||||||| ||| | || ||||||||| Sbjct 39734 TGGCATCAGACCACGCTTCTTGAGCCAGAAAATCGAGGCAAAGGCACCGCTGAAGAAGAT 39675 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 130174 ||||||||| ||||| || | | |||| |||||| Sbjct 39674 GCCCTCCACAGCAGCGAAAGCCACCAAGCGCTGGGCAAAG 39635 >seq9 Length=58907 Score = 93.3 bits (102), Expect = 5e-14 Identities = 224/333 (67%), Gaps = 12/333 (4%) Strand=Plus/Minus Query 14236 ACCGACGGCGTCAATTTCATCGATGAAAACGATACATGG----TTGATTTTCACGGGCAA 14291 ||| | ||| || | ||| |||||||||| ||| | || ||| ||| |||| Sbjct 54062 ACCAATGGCATCCAGTTCGTCGATGAAAATGATGGAAGGCGACTTGGCTTT----GGCAG 54007 Query 14292 CTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG 14351 | ||||| ||||| |||| ||||||||| ||||| ||||| || || | || || Sbjct 54006 CACTAAAGAGCTCTCGGACTCGCTTGGCACCTACACCGACAAAGATTTCGTCGAA-TTCA 53948 Query 14352 CGGCGGAACAT-TGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGG 14410 | | | |||| | || ||||| ||| || |||||| || | |||||| || || || Sbjct 53947 CTACCGGACATGTAGAAAAAGGGCACGCCAGCTTCACCGGCCACGGCTCGCGCAAGCAGA 53888 Query 14411 GTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGG-ATCCTGGCACCACT 14469 ||||||||||| ||||| ||| | ||||| |||| | |||| | | ||||||| Sbjct 53887 GTCTTCCCCGTTCCTGGAGGCCCAACCAGAAGAACACC-CTTGGGCAACTTGGCACCCAA 53829 Query 14470 GCCAAAGTAGCGTTCAGGTTGTTTAAGGAAGTCCACGATTTCTTCCAATTCATCCTTCGC 14529 | | || || ||| || | || || || || || | ||| | | || ||||| || Sbjct 53828 GTCGGAGAAGTTTTCGGGGTTCTTGAGAAACTCGACCACTTCCTGTAGCTCTTCCTTGGC 53769 Query 14530 GGCGTCGATGCCTTCAACGTCACTGAAGCGTGT 14562 | ||| || | ||||| ||||| || || Sbjct 53768 CTCATCGCAACCGTGCACGTCGCTGAATCGGGT 53736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618153324966280