Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq752 239 5e-58 seq31 111 2e-19 >seq752 Length=11106 Score = 239 bits (264), Expect = 5e-58 Identities = 1112/1741 (64%), Gaps = 47/1741 (3%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACA---TTGATTCT 104278 || ||| ||||| | |||||||| || |||||||| |||||| |||| |||| Sbjct 5526 CCCCAGCACATGATTATGCGCGTTGCGGTCGGTATT--TGGGGA-GACAATATTGAGCGC 5470 Query 104279 GTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCC 104336 || |||||||| ||| || |||||| |||| | | ||| ||||| |||| || | Sbjct 5469 GTTTTGGAGACCTACCACCTCATGTCCAGCAAGCTCT--TCACCCACGCCTCACCTACAC 5412 Query 104337 TCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGG 104396 ||||||| |||||||| || || |||| || ||||| ||| || |||| Sbjct 5411 TCTTCAACGCTGGTACCCCCCAGTGTCAGCTGTCTTCCTGTTTCCTAGTCGACATGAAGG 5352 Query 104397 AGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGG 104456 | ||| || | || ||||| | ||||| | | ||||| ||||| ||| || Sbjct 5351 ACGACAGCATTGATGGCATCTACGACACTCTCAAGACCTGTGCCATGATCTCCAAGATGG 5292 Query 104457 CTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGA 104516 |||| || || || || || |||| | | || | ||| ||| || | Sbjct 5291 CTGGTGGAATCGGCTTGAACGTCCACCGCATCCGTGCTACCGGCTCTTACATTGCCGGCA 5232 Query 104517 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 104576 | || ||| ||| | || || ||||| ||||||||||| || ||| ||| || | | Sbjct 5231 CCAACGGTACATCCAACGGCATCATTCCCATGCTTCGCGTCTTCAACAACACTGCCAGAT 5172 Query 104577 ATGTAAATCAAGCTGGGCGTCGA-AAGGGATCTATCGCAGT------CTATCTTGAGCCA 104629 | || | || ||||| | ||| || || ||| | ||| || ||||| Sbjct 5171 ACGTTGACCA----GGGCGGTAACAAGCGACCTGGTGCATTTGCCATCTACCTCGAGCCT 5116 Query 104630 TGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCG 104689 |||||||| || | | || || ||||| ||||| ||||| ||| | || || Sbjct 5115 TGGCACGCAGACGTGTTCGACTTTCTTGATTTGCGAAAGAACCACGGTAAGGAAGAAAAT 5056 Query 104690 CGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGA 104748 || ||| ||||| |||||| ||||| ||||| |||||||||||||||||| | || || Sbjct 5055 CG-TGCTCGCGACCTCTTCCTTGCTCTGTGGATCCCAGATCTCTTCATGAAGCGCGTCGA 4997 Query 104749 GGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGT 104808 ||| || ||||| | ||| | ||||| || || ||||| || | ||| | Sbjct 4996 AAAGAACGGGGATTGGACCCTCATGTGTCCCAACGAGTGCCCTGGCCTGGCTGATTGCTA 4937 Query 104809 GGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCG-GGCGACTGCGA 104867 || ||||| ||||| || || ||| |||||| ||| || || || ||| | || Sbjct 4936 TGGCGAGGAATTTGAGGCTCTCTACGAAAAGTATGAGCGTGAGGGCCGTGGCCGC-AAGA 4878 Query 104868 CGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 104926 | | | || | || | | ||| | | || ||| |||| || ||||| || || | Sbjct 4877 CTATTCGTGC-CCAGAAGCTCTGGTACTCCATCCTCGAGTCCCAGACCGAAACGGGCAAC 4819 Query 104927 CCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG 104986 || | ||||| ||||| || ||||| ||| |||||| || || ||||| |||| Sbjct 4818 CCCTTTATGCTGTACAAGGATGCCTGCAACAGAAAGAGCAACCAGAAGAACCTGGGAACC 4759 Query 104987 ATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCT 105046 || || ||||| || || || || ||| | || | | | |||||| ||| Sbjct 4758 ATTCGCAGCTCCAACCTGTGCACGGAGATCATTGAGTACTGTGCCCCTGATGAGGTTGCT 4699 Query 105047 GTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGAC-ATT 105105 || || ||| | || || | || || || | || || | | | | || | | | Sbjct 4698 GTTTGCAACTTGGCCTCTCTTGCCCTGCCTGCCTTCGTCGA-CTACAAAGAAGGCCGCTA 4640 Query 105106 TGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTAT 105165 || | | || |||||||| || || || ||| | ||||| |||| | || Sbjct 4639 CGACTTCCAGAAGCTCCACGAGGTCACTCAAGTGGTCGTCCGTAACCTCAACAAGATCAT 4580 Query 105166 TGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAAT 105225 ||| || ||||||| ||||| ||||| || || ||| |||| || || || Sbjct 4579 TGACGTCAACCATTACCCCATTGAGGAGGCTCGCAACAGCAACATGCGACATCGACCCAT 4520 Query 105226 TGGTCTCGGTGTTCAGGGTCTCGCGGATG-TATTCATTCTTTGTCGCCACGCATTTGATT 105284 ||| | |||||||||||||| || || | | ||| | || || ||| | || || | Sbjct 4519 CGGTGTTGGTGTTCAGGGTCTTGCTGACGCTTTTCTTGCTCTG-CGCATGCCCTTCGAGT 4461 Query 105285 CCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTG 105344 | ||| || || |||| || || || |||||||| || ||||| || || Sbjct 4460 CTCCCGAGGCCCGTGAGCTCAACAAGCAGATCTTCGAGACCATCTACCACGCTGCCCTGA 4401 Query 105345 AGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAG 105404 || | ||| |||| | | | || || || ||||| |||| ||||| | Sbjct 4400 CAGCCTCTCTTGAGCTGGCCAAAGAGCAAGGCCCCTACTCTACCTTCAAGGGCTCTCCCG 4341 Query 105405 CTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAG-CTTC-----ACT 105458 | || |||| | |||||||| || |||| |||| || |||| |||| | Sbjct 4340 CCTCGGAAGGTATTCTTCAATTCGACATGT-GGAATGT-----CAAGCCTTCTGAGTTAT 4287 Query 105459 ACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCA 105518 || ||||| ||| ||||| | ||||||||| | ||| |||| ||| | || Sbjct 4286 GGGAGTGGGACAGTCTGAAGGAGCAGATCAAGGAGCACGGTATTCGCAACTCGTTGCTGC 4227 Query 105519 TGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAAC 105578 | ||||| ||||| || || || ||| | ||||| ||||||| ||||| |||||||| | Sbjct 4226 TCGCTCCCATGCCCACCGCATCGACCTCGCAAATTCTGGGTAACAATGAGTGCTTTGAGC 4167 Query 105579 CCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACA 105638 | |||||| | ||||| || | | | | | | || || || || | | |||||| Sbjct 4166 CATACACGTCCAACATTTACCAGCGCCGTGTCTTGGCTGGTGAATTCCAGGTCGTCAACC 4107 Query 105639 AGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCA 105698 ||| | | || ||| || || ||||||||||| | | |||||| | | || Sbjct 4106 CCTGGCTCCTCAAGGATCTCGTCGACATGGGTCTCTGGTCTGATGCCATGAAGAACCGCA 4047 Query 105699 TGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAGT 105758 | | | | |||||||||||| || || |||| || || || ||| Sbjct 4046 TCATTGCCGAGAATGGTTCCATTCAGAACATCCCCAATATCCCCGCCGACATCAAGGCTC 3987 Query 105759 TGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTG 105818 | || || |||||||| || | |||| || | |||||||| ||||| | Sbjct 3986 TCTATAAGACTGTTTGGGAGATTTCTCAGCGTCATGTTATCCAGATGGCCGCCGATCGCG 3927 Query 105819 GTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTCTTCATGGAAAGTCCAACGATGTC 105876 || ||| || || | |||| ||| | || | |||| | ||| || ||| Sbjct 3926 GTGCCTTTATCGACC--AGTCCCAGTCGCTCAACGTTCACATGAAGGATCCTACTATGGG 3869 Query 105877 CAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTA 105936 |||| || | ||||||||| | | |||||| ||||||||| ||||| ||||| || Sbjct 3868 CAAGATCACCTCTATGCACTTTGCTGGCTGGAAGTTGGGTCTCAAGACGGGCATGTACTA 3809 Query 105937 C 105937 | Sbjct 3808 C 3808 >seq31 Length=45476 Score = 111 bits (122), Expect = 2e-19 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 94827 TGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGG 94886 ||| ||||| ||||||||| ||| |||| | | |||| |||||||||||||| || Sbjct 39665 TGTGGAGGGCATCTTCTTCAGCGGTGCCTTTGCCTCGATTTTCTGGCTCAAGAAGCGTGG 39724 Query 94887 TCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCA 94946 ||| |||||||||||| |||||| ||||| |||||||| ||||| ||||| | ||| Sbjct 39725 TCTGATGCCAGGTCTCACCTTCTCTAACGAACTTATCTCCCGTGATGAGGGTTTGCACAC 39784 Query 94947 AGAGTTTGC 94955 ||| ||||| Sbjct 39785 AGACTTTGC 39793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582994957018120