Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq326 163 9e-35 seq106 143 8e-29 seq26 105 2e-17 seq320 104 7e-17 seq1405 93.3 1e-13 seq23831 89.7 2e-12 >seq326 Length=20000 Score = 163 bits (180), Expect = 9e-35 Identities = 177/235 (75%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||||||||| || | | || || | ||| ||||||||||| || ||||| || | Sbjct 12522 TTTGCATACCACCCCGCAGACGCAGGACCAAATGCAGAGTAGACTCCTTCTGAATGTTGT 12581 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | || ||||| ||||| || || || || ||||||||||| || || ||||| | Sbjct 12582 AGTCGGCCAAAGTTCGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGT 12641 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||| ||||| ||||| || || ||||| ||||| ||||||||||| || | ||| || | Sbjct 12642 CAGGGGGAATGCCTTCCTTGTCTTGAATCTTAGCCTTTACATTATCGATTGTATCCGAAG 12701 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| ||||| | ||| | ||||| || || | || || || || |||||||| Sbjct 12702 ATTCGACTTCCAATGTGATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 12756 Score = 141 bits (156), Expect = 3e-28 Identities = 164/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || ||||| |||||||| || || || || ||||| || || Sbjct 12754 CATACCACCACGGAGGCGGAGTACAAGGTGAAGAGTGGATTCCTTCTGGATATTGTAGTC 12813 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || |||||||| || || || ||||| ||||| | || ||||||||||| Sbjct 12814 GGCGAGGGTACGACCATCTTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGATCAGG 12873 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| ||||| ||||||||||| || | ||| ||||| || || | || || | || Sbjct 12874 AGGAATACCTTCCTTATCCTGAATCTTCGATTTGACATTGTCGATGGTGTCGGAGGACTC 12933 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAA 140727 || ||||| || | |||||||| || | || || |||| Sbjct 12934 GACCTCAAGGGTGATGGTCTTTCCAGTCAAAGTCTTGACAA 12974 Score = 140 bits (154), Expect = 1e-27 Identities = 172/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| ||||| || | | || || || ||||| || ||||| || || || || | Sbjct 13051 TTTGCATGCCACCTCGGAGGCGGAGGACGAGGTGAAGGGTTGACTCCTTCTGGATGTTGT 13110 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | |||| | || || || || ||||| || |||||||| ||||| ||||| ||||| | Sbjct 13111 AGTCAGCAAGAGTGCGACCGTCCTCAAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGT 13170 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || ||||| || ||||||||||| || | || ||||| ||||| | |||||| | Sbjct 13171 CGGGGGGGATTCCCTCCTTATCCTGAATCTTCGACTTGACATTGTCAATGGTATCAGACG 13230 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || |||| ||||| ||||| || || || || || || ||||| Sbjct 13231 ACTCGACCTCGAGAGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 13285 Score = 118 bits (130), Expect = 3e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || ||||| | |||| || || || || || || || Sbjct 12301 ACCACCACGCAGACGAAGCACGAGATGCAAAGTACTTTCCTTCTGGATGTTGTAGTCGCT 12360 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || || ||||| || || ||||| ||||| || || |||||||| || ||||| Sbjct 12361 CAGCGTGCGGCCGTCTTCTAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCGGGAGG 12420 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||||| || ||||||||||| || | ||| ||| | || || | ||||| | ||| || Sbjct 12421 GATTCCCTCCTTATCCTGAATCTTGGATTTGACAGTGTCGATGGTATCAGCAGATTCGAC 12480 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| | || | |||||||| || | || || |||||||| ||||| Sbjct 12481 TTCCAAGGTGATAGTCTTTCCAGTCAAGGTCTTGACAAAAATTTGCAT 12528 >seq106 Length=32284 Score = 143 bits (158), Expect = 8e-29 Identities = 454/703 (65%), Gaps = 3/703 (0%) Strand=Plus/Minus Query 349965 TGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAA 350024 ||||||| || | ||||| || |||||||| ||||| || | || ||| | | || | Sbjct 8983 TGCGTCGTCTCCGTACTGCTTGCGAACGTGCCAAGCGCACCCTCTCTTCTGCAGCTCAGA 8924 Query 350025 CCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTG 350084 | | ||||| ||||||||||| || || | ||||||| | ||||||| || | Sbjct 8923 CTACGATTGAGATTGATTCTCTATTCGAGGGTATCGATTTCTACACCCCTATTACCCGGG 8864 Query 350085 CTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAG 350144 | || || ||||| | || ||||||||| | | || || | ||||| || | Sbjct 8863 CCCGTTTCGAAGAGCTTTGCCAGGATCTTTTCCGCTCCACCATCCAGCCTGTCGACCGTG 8804 Query 350145 TATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTT 350204 | | | || || || || |||| ||| || |||| | || || |||||||||| Sbjct 8803 TTCTCACTGACGCCAAGATTGACAAATCTCAAGTTCATGAGATTGTCTTGGTTGGTGGTT 8744 Query 350205 CTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTT 350264 | || |||||||| | | || | | | || || | ||||| |||||||| || Sbjct 8743 CCACCCGTATTCCCCGAATCCAGAAACTCATCTCCGACTACTTTAACGGCAAAGAGCCCA 8684 Query 350265 CTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTT 350324 | || || || || ||||| |||||||| || ||||| ||||| ||||| |||| Sbjct 8683 ACAAGTCTATCAACCCTGATGAGGCTGTTGCGTACGGTGCCGCTGTCCAGGCTGCTATCC 8624 Query 350325 TATCTGGAAATAAGAGTTCTAA---AATTGATGATCTATTACTACTAGATGTAACTCCAC 350381 | |||||| | | ||| || | | || | || | || || || | || Sbjct 8623 TGTCTGGAGACACTTCTTCCAAGTCTACCAACGAAATCTTGTTGCTTGACGTCGCGCCTT 8564 Query 350382 TTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTA 350441 | || || || | || || | |||| | | ||||| || |||||| | || | | Sbjct 8563 TGTCTCTGGGTATTGAGACCGCCGGTGGAATGATGACGAAGCTCATTCCTCGTAACACAA 8504 Query 350442 CTGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAA 350501 | | || || || ||||| | ||| || || || | || || ||||| | ||| Sbjct 8503 CCATTCCAACCAAGAAGTCTGAGGTTTTCTCGACCTTCTCTGACAACCAGCCTGGGGTGC 8444 Query 350502 CAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAAT 350561 ||||| || ||||| || || || ||||| || || || || | || | | Sbjct 8443 TCATTCAGGTCTTTGAGGGCGAGCGACAGCGCACCAAGGACAACAACCTCATGGGCAAGT 8384 Query 350562 TTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCG 350621 || || | || ||||| || || | || ||||||||||||||||| | || | Sbjct 8383 TTGAGCTTACTGGCATTCCCCCCGCTCCCCGTGGTGTTCCTCAGATTGAAGTTACCTTTG 8324 Query 350622 ATATTGATTCAAATGGTATTTTAAATGTTACCGCAGTTGAAAA 350664 || | ||| | |||||||| | ||||| | || |||||||| Sbjct 8323 ATCTCGATGCCAATGGTATCATGAATGTGTCTGCTGTTGAAAA 8281 >seq26 Length=47302 Score = 105 bits (116), Expect = 2e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||| ||||| | | || || | ||| || || ||| || || || || || || | Sbjct 11969 ACCGCCACGCAGGCGCAGCACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCA 12028 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || ||||| || || || || ||||||||||| || |||||||| || || || Sbjct 12029 CAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGG 12088 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||| || || || ||||| || || || || || || || || | || || | || || Sbjct 12089 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 12148 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | ||||| || || || ||||| || ||||||||||| Sbjct 12149 CTCAAGGGTGATAGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT 12196 >seq320 Length=20187 Score = 104 bits (114), Expect = 7e-17 Identities = 81/97 (84%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 377494 ACACCAGCAAAGTGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGC 377553 ||||| ||||| ||||| || || ||||| | ||| |||| |||||||||||| |||||| Sbjct 17877 ACACCGGCAAAATGGAACGTGTTCAGAGTCATTTGCGTAGCGGGCTCACCAATAGACTGC 17818 Query 377554 GCTGCAATAACGCCAACCATTTCTCCAGGATTGACAA 377590 ||||| | |||||| |||||||| ||||| |||||| Sbjct 17817 GCTGCCAGAACGCCGACCATTTCACCAGGGCTGACAA 17781 >seq1405 Length=5050 Score = 93.3 bits (102), Expect = 1e-13 Identities = 163/234 (70%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 349655 GCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCC 349714 || || || |||||||| ||||| || | || || || |||| | || ||||| Sbjct 1364 GCTACCAAGGATGCTGGTGTTATTGCCGGTCTCAACGTCCTCCGAATTGTCAACGAACCT 1423 Query 349715 ACTGCTGCAGCAATTGCATATGGGCTTGATAAAA-TGAGTGACCAAGaaaaaaaTATTCT 349773 ||||| || || || || || || || || || | |||| | | || | |||| | Sbjct 1424 ACTGCCGCCGCTATCGCTTACGGTCTAGACAAGACTGAGGG--CGAGCGACAAATCAT-- 1479 Query 349774 TATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAAT 349833 | | | ||| | ||||||||||| || ||||| ||||| || | |||| |||| | Sbjct 1480 TGTCTACGATCTTGGTGGTGGTACCTTCGATGTCTCACTTCTGTCCATTGACCAGGGTGT 1539 Query 349834 TTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887 ||| || ||| || ||||||||||| || |||||||| || |||||||| || Sbjct 1540 TTTCGAGGTTTTGGCTACTGCTGGTGACACTCATCTTGGCGGTGAAGATTTCGA 1593 >seq23831 Length=243 Score = 89.7 bits (98), Expect = 2e-12 Identities = 164/238 (69%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 349605 CTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAG 349664 |||| || ||||||||||| ||||| || ||||| || || || ||| || ||||||| Sbjct 6 CTGAAGCAGTTATTACTGTTCCAGCATACTTTAACGACGCACAACGTCAAGCTACAAAAG 65 Query 349665 ATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAG 349724 | || || ||||| || ||||| || | | || || ||||| || || || |||| Sbjct 66 AAGCAGGTGAAATTGCAGGTTTAAAAGTAATGCGTATCATCAATGAGCCTACAGCAGCAG 125 Query 349725 CAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATT 349784 | | || ||||| | || ||| | || |||| |||| || || |||| Sbjct 126 CTTTAGCTTATGGATTAGACAAA--CAAGGA-AAAGACCAAAAAATCGCAGGTTACGATT 182 Query 349785 TAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGT 349842 ||||||| |||||||||||| | || | || | | | || ||| |||||||||| Sbjct 183 TAGGTGGAGGTACTTTTGATATTTCTATCTTAGAATTAGGTGACGGAGTTTTTGAAGT 240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514546500134789