Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq752 232 7e-56 seq29927 102 9e-17 seq174 89.7 6e-13 >seq752 Length=11106 Score = 232 bits (256), Expect = 7e-56 Identities = 365/518 (70%), Gaps = 6/518 (1%) Strand=Plus/Minus Query 53243 GAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAAC 53302 ||||| ||| || | ||| | ||| ||| || |||||| | || || || |||||| Sbjct 5463 GAGACCTACCACCTCATGTCCAGCAAGCTCTTCACCCACGCCTCACCTACACTCTTCAAC 5404 Query 53303 GCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCG 53362 |||||||| || |||| |||| ||| ||||| || | |||||||| ||| Sbjct 5403 GCTGGTACCCCCCAGTGTCAGCTGTCTTCCTGTTTCCTAGTCGACATGAAGGACGACAGC 5344 Query 53363 ATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGT 53422 || || ||||||||||| || |||||| |||||| ||||||||| | | ||||| Sbjct 5343 ATTGATGGCATCTACGACACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGTGGA 5284 Query 53423 ATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAACG 53480 ||||| | || || | || ||||||| | |||| | || || || |||| Sbjct 5283 ATCGGCTTGAACG--TCCACCGCATCCGTGCTACCGGCTCTTACATTGCCGGCACCAACG 5226 Query 53481 GCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCA 53540 | || | || ||| | || ||||| ||||||||||||||||| ||| | ||||| Sbjct 5225 GTACATCCAACGGCATCATTCCCATGCTTCGCGTCTTCAACAACACTGCCAGATACGTTG 5166 Query 53541 ACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCG 53600 ||||||| ||| ||||| || | || ||||||||||||||||| |||||||| | Sbjct 5165 ACCAGGGCGGTAACAAGCGACCTGGTGCATTTGCCATCTACCTCGAGCCTTGGCACGCAG 5106 Query 53601 ACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGT 53659 || | | || ||||| || |||| ||| || ||| | ||||| | || ||| || Sbjct 5105 ACGTGTTCGACTTTCTTGATTTGCGAAAGAACCACGGTAAGGAAGAAAATCG-TGCTCGC 5047 Query 53660 GACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAG 53719 ||||| || ||||||||||| || || ||||||||| | || || ||| ||| | Sbjct 5046 GACCTCTTCCTTGCTCTGTGGATCCCAGATCTCTTCATGAAGCGCGTCGAAAAGAACGGG 4987 Query 53720 GAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCT 53757 || ||| ||| ||||| || ||||||||||| ||||| Sbjct 4986 GATTGGACCCTCATGTGTCCCAACGAGTGCCCTGGCCT 4949 Score = 104 bits (114), Expect = 3e-17 Identities = 131/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 55744 GACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCGTGGTGCGTA 55803 ||| || ||||||||| | ||| | | || | ||| || ||||| ||||| | Sbjct 3979 GACTGTTTGGGAGATTTCTCAGCGTCATGTTATCCAGATGGCCGCCGATCGCGGTGCCTT 3920 Query 55804 CATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAG 55863 ||||||||||||||||| || ||| | |||| || ||||| | ||| |||| | | Sbjct 3919 TATCGACCAGTCCCAGTCGCTCAACGTTCACATGAAGGATCCTACTATGGGCAAGATCAC 3860 Query 55864 CTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGAC 55923 ||| ||||||||| || |||||| ||| ||||||||||| |||||||| |||| || Sbjct 3859 CTCTATGCACTTTGCTGGCTGGAAGTTGGGTCTCAAGACGGGCATGTACTACTTGCGCAC 3800 >seq29927 Length=230 Score = 102 bits (112), Expect = 9e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 53492 GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGT 53551 || ||| |||| ||| | ||||||||||||||||||||| | ||||| |||||||| ||| Sbjct 86 GGCATCCTGCCCATGATTCGCGTCTTCAACAACACGGCCAGATACGTTAACCAGGGCGGT 145 Query 53552 GGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAG 53611 ||||| ||| | | ||||||||||||||| | |||||||| || | | || Sbjct 146 AACAAGCGACCGGGTGCAGTTGCCATCTACCTCGAGGCTTGGCACGCAGAGGTGTTCGAC 205 Query 53612 TTTCTCGAGCTGCG 53625 ||||| ||| |||| Sbjct 206 TTTCTGGAGTTGCG 219 >seq174 Length=26573 Score = 89.7 bits (98), Expect = 6e-13 Identities = 196/294 (67%), Gaps = 0/294 (0%) Strand=Plus/Minus Query 152026 CGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAAC 152085 || |||||| | || || | || || ||||| |||||||| || || | || || Sbjct 17082 CGGGTGAAGGTATAACGAGGACTAGCAGCATCGGAACCACCTGCGAGACGGGAACCGAAG 17023 Query 152086 TGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTC 152145 | || ||||| |||| |||| ||||||| || | |||||||| ||||| Sbjct 17022 TTACCGCTTGGCTCCAGGATATTGATATTGTTGGATCCAATAAAATTCTGTGCCAAGCCG 16963 Query 152146 ACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTAT 152205 | |||||| ||||| || |||||||||||||| || |||||||| | || || Sbjct 16962 ATAATCGTCTGTTGCAGCGAGGCCTCACCGTGGTGATATGCAGTCTGCTCAGAGACATAA 16903 Query 152206 CCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATC 152265 || || | | | | ||||| | ||| | ||| || ||||| || || || | Sbjct 16902 CCAGCGAGTTCCACAACCTTTTTATCCTTGACCAGATTTCGCTTGAAGCAAGCATAGAGA 16843 Query 152266 ACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTG 152319 ||||| ||||| |||||||| ||||| | ||| || || |||||| || Sbjct 16842 ACCTTTCGCTGACCAGGTTTCAAGCCGTCAATGACGGACGGGATGGAACGCATG 16789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546966585787400