Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq326 116 3e-21 seq433 100 2e-16 >seq326 Length=20000 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||| |||| |||||| |||| || | ||||| ||| | || Sbjct 12756 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACTATCACATTGGAAGTCGAATCTTCG 12697 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || || ||||||||||| |||||||| || || || || Sbjct 12696 GATACAATCGATAATGTAAAGGCTAAGATTCAAGACAAGGAAGGCATTCCCCCTGACCAG 12637 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 ||||| | || | || || || || | || || | ||| | || |||| ||||| Sbjct 12636 CAGCGACTCATCTTTGCTGGTAAGCAGCTCGAGGA-TGGCCGAACTTTGGCCGACTACAA 12578 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| |||||||| || | |||||||| ||||| |||||||||| || Sbjct 12577 CATTCAGAAGGAGTCTACTCTGCATTTGGTCCTGCGTCTGCGGGGTGGTAT 12527 >seq433 Length=16792 Score = 100 bits (110), Expect = 2e-16 Identities = 141/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 26981 ATACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGA 27040 |||| |||| ||| | | || || || ||||| |||||| | || || ||||| || || Sbjct 5071 ATACACCATCCAGTT--TCGTTAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGA 5014 Query 27041 ACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACC 27100 | || ||| |||| || | ||||| ||||| |||||||| || ||||| || || Sbjct 5013 GTCCTCGGACACGATCGACAATGTCAAGGCCAAAATCCAAGACAAGGAGGGCATTCCCCC 4954 Query 27101 CGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGA 27160 || || ||||| || || | ||| ||||| || | || ||| || ||| | | ||| Sbjct 4953 TGACCAGCAGCGATTGATTTTCGCTGGCAAGCAGCTTGAGGACGGTCGAACCCTGTGCGA 4894 Query 27161 TTACAACATTCAAAAGG 27177 ||||||||||| |||| Sbjct 4893 CTACAACATTCAGAAGG 4877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434720169629760