Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_028657.1 Length=60919 Score E Sequences producing significant alignments: (Bits) Value seq25565 185 3e-42 >seq25565 Length=235 Score = 185 bits (204), Expect = 3e-42 Identities = 172/217 (79%), Gaps = 1/217 (0%) Strand=Plus/Minus Query 7276 AGAGGTGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTAC 7335 ||||| || || || ||||| || | || ||||| || ||||| || || |||||||| Sbjct 220 AGAGGGGTGAATAAGGTCATCTTGATCGGCAACGTGGGCGGTGATCCCGAGACCCGCTAT 161 Query 7336 ATGCCCAACGGCAATGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGAC 7395 ||||||| ||||| ||||||||||||||||| || || |||| ||| |||||||||||| Sbjct 160 CTGCCCAATGGCAACGCGGTGACCAACATCACGCTTGCAACCACCGACAGCTGGAAGGAC 101 Query 7396 AAGCAGACCGGCCAGCAACAGGAACGCGCCGAGTTCCACCGCGTGGTGTTCTTCGGTCGC 7455 ||||||||| ||| || ||||||||| |||| | ||||| || || | ||||| Sbjct 100 AAGCAGACCAGCCTGCTCCAGGAACGCACCGAATGGCACCGTGTCGTTCTGTTCGGCAAA 41 Query 7456 CTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTT 7492 | || ||||||||||||||||||| |||| |||||| Sbjct 40 GTAGCCGAGATCGCCGGCGAGTACCGGCGC-AGGGTT 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194734843651686