Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_028683.1 Length=177643 Score E Sequences producing significant alignments: (Bits) Value seq20645 91.5 2e-13 >seq20645 Length=266 Score = 91.5 bits (100), Expect = 2e-13 Identities = 130/182 (71%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 148014 TGCACGAATCATACCAGCGTTAACACCAATACCAGCTCGTTTACTGATGTACTTAATGAT 148073 |||||| || ||| ||||| | ||| |||||||| |||| || | ||| || | ||| Sbjct 22 TGCACGGATACGACCGGCGTTGATACCGATACCAGCGCGTTGGCTCACGTATTTTACGAT 81 Query 148074 TGAAGCATTTGTGGTATTAATCGAATCCAGTGAATCACCACCTTCAATAACAACACAACT 148133 || | ||| | || || ||||||| ||| |||| |||||| | || || Sbjct 82 AGATGATGCTGTCGCGTTGATGGAATCCAAGCTATCGCCACATTCAATCAGTACGCAT-- 139 Query 148134 CGAG---AATTGACGAGTCGGAGTACGAACACCTGCCATAATTGGAGTTGGCAGTGAAAT 148190 ||| || ||||||||||| ||||| || || ||||| || || |||||||||||||| Sbjct 140 -GAGCTAAACTGACGAGTCGGCGTACGCACTCCCGCCATGATAGGCGTTGGCAGTGAAAT 198 Query 148191 CT 148192 || Sbjct 199 CT 200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568070562472440