Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_028773.1 Length=182145 Score E Sequences producing significant alignments: (Bits) Value seq20645 84.2 3e-11 >seq20645 Length=266 Score = 84.2 bits (92), Expect = 3e-11 Identities = 128/181 (71%), Gaps = 6/181 (3%) Strand=Plus/Minus Query 18308 TGCCAACCCCAATTATGGCAGGCGTTCGCACCCCAACCCGCCAGTT---CTCAAGCTGTG 18364 ||||||| || || ||||| || || || || || || || ||||| |||| || | Sbjct 191 TGCCAACGCCTATCATGGCGGGAGTGCGTACGCCGACTCGTCAGTTTAGCTCATGC---G 135 Query 18365 TTAAGATTGAAGTCGGTGACAGCCTCGAATCAATTAACGAATCAGCCGCCGCAGTCGTAA 18424 | ||||||| || || ||| | || || || |||| |||| | | |||||| Sbjct 134 TACTGATTGAATGTGGCGATAGCTTGGATTCCATCAACGCGACAGCATCATCTATCGTAA 75 Query 18425 ATTATATTAGTAAACGCGCTGGTATCGGTATTAACGCTGGTCGAATTCGTGCGGAAGGAA 18484 | || | || ||||||||||||||||||| ||||| ||||| || ||||| ||||| Sbjct 74 AATACGTGAGCCAACGCGCTGGTATCGGTATCAACGCCGGTCGTATCCGTGCATTAGGAA 15 Query 18485 G 18485 | Sbjct 14 G 14 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582470396215400