Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_028940.1 Length=170286 Score E Sequences producing significant alignments: (Bits) Value seq20645 87.8 2e-12 >seq20645 Length=266 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/199 (69%), Gaps = 14/199 (7%) Strand=Plus/Plus Query 145492 CCGGCGTTAACACCAATACCAGCGCGTTTACTGATATATTT-------GATAATGCTTTC 145544 |||||||| | ||| ||||||||||||| || | ||||| ||| ||||| || Sbjct 35 CCGGCGTTGATACCGATACCAGCGCGTTGGCTCACGTATTTTACGATAGATGATGCTGTC 94 Query 145545 GTTCACTTTGTTAATTGAATTTAGCGAATCGCCACCTTCAATTACTACACATGAACTGAA 145604 | ||| || |||| | |||||||| |||||| | ||| ||||| || || Sbjct 95 G-------CGTTGATGGAATCCAAGCTATCGCCACATTCAATCAGTACGCATGAGCTAAA 147 Query 145605 TTGACGAGTTGGTGTACGTACACCTGCCATAATAGGAGTAGGCAAAGAAATTTGACGTTT 145664 |||||||| || ||||| || || ||||| ||||| || |||| ||||| | | | Sbjct 148 CTGACGAGTCGGCGTACGCACTCCCGCCATGATAGGCGTTGGCAGTGAAATCTTAAAAGT 207 Query 145665 TGATACAGCATTATaaaaa 145683 ||||| || | |||||| Sbjct 208 CGATACCGCGTCGTAAAAA 226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544538892804080